Platforms for optogenetic stimulation and feedback control
S Kumar, M Khammash - Frontiers in Bioengineering and …, 2022 - frontiersin.org
Harnessing the potential of optogenetics in biology requires methodologies from different
disciplines ranging from biology, to mechatronics engineering, to control engineering. Light …
disciplines ranging from biology, to mechatronics engineering, to control engineering. Light …
[HTML][HTML] Balancing a genetic toggle switch by real-time feedback control and periodic forcing
JB Lugagne, S Sosa Carrillo, M Kirch, A Köhler… - Nature …, 2017 - nature.com
Cybergenetics is a novel field of research aiming at remotely pilot cellular processes in real-
time with to leverage the biotechnological potential of synthetic biology. Yet, the control of …
time with to leverage the biotechnological potential of synthetic biology. Yet, the control of …
Cell-machine interfaces for characterizing gene regulatory network dynamics
JB Lugagne, MJ Dunlop - Current opinion in systems biology, 2019 - Elsevier
Gene regulatory networks and the dynamic responses they produce offer a wealth of
information about how biological systems process information about their environment …
information about how biological systems process information about their environment …
Rapid prototyping and design of cybergenetic single-cell controllers
The design and implementation of synthetic circuits that operate robustly in the cellular
context is fundamental for the advancement of synthetic biology. However, their practical …
context is fundamental for the advancement of synthetic biology. However, their practical …
Deep model predictive control of gene expression in thousands of single cells
JB Lugagne, CM Blassick, MJ Dunlop - Nature Communications, 2024 - nature.com
Gene expression is inherently dynamic, due to complex regulation and stochastic
biochemical events. However, the effects of these dynamics on cell phenotypes can be …
biochemical events. However, the effects of these dynamics on cell phenotypes can be …
Regulation of gene expression and signaling pathway activity in mammalian cells by automated microfluidics feedback control
Gene networks and signaling pathways display complex topologies and, as a result,
complex nonlinear behaviors. Accumulating evidence shows that both static (concentration) …
complex nonlinear behaviors. Accumulating evidence shows that both static (concentration) …
Automatic synchronisation of the cell cycle in budding yeast through closed-loop feedback control
G Perrino, S Napolitano, F Galdi, A La Regina… - Nature …, 2021 - nature.com
The cell cycle is the process by which eukaryotic cells replicate. Yeast cells cycle
asynchronously with each cell in the population budding at a different time. Although there …
asynchronously with each cell in the population budding at a different time. Although there …
In-Silico Analysis and Implementation of a Multicellular Feedback Control Strategy in a Synthetic Bacterial Consortium
G Fiore, A Matyjaszkiewicz, F Annunziata… - ACS Synthetic …, 2017 - ACS Publications
Living organisms employ endogenous negative feedback loops to maintain homeostasis
despite environmental fluctuations. A pressing open challenge in Synthetic Biology is to …
despite environmental fluctuations. A pressing open challenge in Synthetic Biology is to …
A tunable dual-input system for on-demand dynamic gene expression regulation
Cellular systems have evolved numerous mechanisms to adapt to environmental stimuli,
underpinned by dynamic patterns of gene expression. In addition to gene transcription …
underpinned by dynamic patterns of gene expression. In addition to gene transcription …
Optimal control of bacterial growth for the maximization of metabolite production
Microorganisms have evolved complex strategies for controlling the distribution of available
resources over cellular functions. Biotechnology aims at interfering with these strategies, so …
resources over cellular functions. Biotechnology aims at interfering with these strategies, so …