Ecological modelling approaches for predicting emergent properties in microbial communities

NI van den Berg, D Machado, S Santos… - Nature ecology & …, 2022 - nature.com
Recent studies have brought forward the critical role of emergent properties in shaping
microbial communities and the ecosystems of which they are a part. Emergent properties …

Trophic interactions and the drivers of microbial community assembly

M Gralka, R Szabo, R Stocker, OX Cordero - Current Biology, 2020 - cell.com
Despite numerous surveys of gene and species content in heterotrophic microbial
communities, such as those found in animal guts, oceans, or soils, it is still unclear whether …

Co-occurrence networks reveal more complexity than community composition in resistance and resilience of microbial communities

C Gao, L Xu, L Montoya, M Madera… - Nature …, 2022 - nature.com
Plant response to drought stress involves fungi and bacteria that live on and in plants and in
the rhizosphere, yet the stability of these myco-and micro-biomes remains poorly …

Phylotype diversity within soil fungal functional groups drives ecosystem stability

S Liu, P García-Palacios, L Tedersoo… - Nature Ecology & …, 2022 - nature.com
Soil fungi are fundamental to plant productivity, yet their influence on the temporal stability of
global terrestrial ecosystems, and their capacity to buffer plant productivity against extreme …

Nutrient supply controls the linkage between species abundance and ecological interactions in marine bacterial communities

T Dai, D Wen, CT Bates, L Wu, X Guo, S Liu… - Nature …, 2022 - nature.com
Nutrient scarcity is pervasive for natural microbial communities, affecting species
reproduction and co-existence. However, it remains unclear whether there are general rules …

Emergent phases of ecological diversity and dynamics mapped in microcosms

J Hu, DR Amor, M Barbier, G Bunin, J Gore - Science, 2022 - science.org
From tropical forests to gut microbiomes, ecological communities host notably high numbers
of coexisting species. Beyond high biodiversity, communities exhibit a range of complex …

Long-term organic fertilizer substitution increases rice yield by improving soil properties and regulating soil bacteria

J Liu, A Shu, W Song, W Shi, M Li, W Zhang, Z Li, G Liu… - Geoderma, 2021 - Elsevier
Applying organic and inorganic fertilizers together could sustainably increase crop yields.
The effects of long-term organic fertilizer substitution on soil microbial community structure …

In vitro interaction network of a synthetic gut bacterial community

AS Weiss, AG Burrichter, AC Durai Raj… - The ISME …, 2022 - academic.oup.com
A key challenge in microbiome research is to predict the functionality of microbial
communities based on community membership and (meta)-genomic data. As central …

Spatiotemporal dynamics of root exudates drive microbial adaptation mechanisms under day-night alterations in constructed wetlands

X Zhao, M Guo, T Zhang, S Bai, Y Meng, Y Tian… - Chemical Engineering …, 2023 - Elsevier
Root exudates, as plant-derived metabolites, play a pivotal role in shaping the assembly of
rhizosphere microorganisms by acting as nutrients and signals. However, the spatial …

[HTML][HTML] Bacteria-driven phthalic acid ester biodegradation: current status and emerging opportunities

R Hu, H Zhao, X Xu, Z Wang, K Yu, L Shu, Q Yan… - Environment …, 2021 - Elsevier
The extensive use of phthalic acid esters (PAEs) has led to their widespread distribution
across various environments. As PAEs pose significant threats to human health, it is urgent …