[HTML][HTML] Emergent CRISPR–Cas-based technologies for engineering non-model bacteria

DC Volke, E Orsi, PI Nikel - Current Opinion in Microbiology, 2023 - Elsevier
Highlights•CRISPR–Cas systems promoted the engineering of non-model bacteria.•Tools
include genome modifications and finely-tuned transcriptional regulation.•CRISPR–Cas …

Synthetic biology of extremophiles: a new wave of biomanufacturing

JW Ye, YN Lin, XQ Yi, ZX Yu, X Liu, GQ Chen - Trends in Biotechnology, 2023 - cell.com
Microbial biomanufacturing, powered by the advances of synthetic biology, has attracted
growing interest for the production of diverse products. In contrast to conventional microbes …

[HTML][HTML] Modular (de) construction of complex bacterial phenotypes by CRISPR/nCas9-assisted, multiplex cytidine base-editing

DC Volke, RA Martino, E Kozaeva, AM Smania… - Nature …, 2022 - nature.com
CRISPR/Cas technologies constitute a powerful tool for genome engineering, yet their use
in non-traditional bacteria depends on host factors or exogenous recombinases, which limits …

QurvE: user-friendly software for the analysis of biological growth and fluorescence data

NT Wirth, J Funk, S Donati, PI Nikel - Nature Protocols, 2023 - nature.com
The study of growth (of cells, organ-isms or populations) is inherent to all biological
disciplines. The fundamental properties of a biological system or the physiological effects of …

[HTML][HTML] Automating the design-build-test-learn cycle towards next-generation bacterial cell factories

N Gurdo, DC Volke, D McCloskey, PI Nikel - New Biotechnology, 2023 - Elsevier
Automation is playing an increasingly significant role in synthetic biology. Groundbreaking
technologies, developed over the past 20 years, have enormously accelerated the …

Synthetic biology for plant genetic engineering and molecular farming

Y Wang, GS Demirer - Trends in Biotechnology, 2023 - cell.com
Many efforts have been put into engineering plants to improve crop yields and stress
tolerance and boost the bioproduction of valuable molecules. Yet, our capabilities are still …

[HTML][HTML] Applications of synthetic biology in medical and pharmaceutical fields

X Yan, X Liu, C Zhao, GQ Chen - Signal transduction and targeted …, 2023 - nature.com
Synthetic biology aims to design or assemble existing bioparts or bio-components for useful
bioproperties. During the past decades, progresses have been made to build delicate …

Developing a CRISPR‐assisted base‐editing system for genome engineering of Pseudomonas chlororaphis

SJ Yue, P Huang, S Li, YY Cai, W Wang… - Microbial …, 2022 - Wiley Online Library
Pseudomonas chlororaphis is a non‐pathogenic, plant growth‐promoting rhizobacterium
that secretes phenazine compounds with broad‐spectrum antibiotic activity. Currently …

The pAblo· pCasso self-curing vector toolset for unconstrained cytidine and adenine base-editing in Gram-negative bacteria

E Kozaeva, ZS Nielsen… - Nucleic Acids …, 2024 - academic.oup.com
A synthetic biology toolkit, exploiting clustered regularly interspaced short palindromic
repeats (CRISPR) and modified CRISPR-associated protein (Cas) base-editors, was …

Achieving net zero CO2 emission in the biobased production of reduced platform chemicals using defined co-feeding of methanol

CA Villa, J Marienhagen, S Noack, SA Wahl - Current Opinion in …, 2023 - Elsevier
Highlights•Combining enzyme engineering and pathway design allows for many methanol
assimilation routes.•Several, reduced products can be synthesized from a mixture of sugar …