Horizontal gene transfer and adaptive evolution in bacteria

BJ Arnold, IT Huang, WP Hanage - Nature Reviews Microbiology, 2022 - nature.com
Horizontal gene transfer (HGT) is arguably the most conspicuous feature of bacterial
evolution. Evidence for HGT is found in most bacterial genomes. Although HGT can …

Deciphering bacterial mechanisms of root colonization

HE Knights, B Jorrin, TL Haskett… - Environmental …, 2021 - Wiley Online Library
Bacterial colonization of the rhizosphere is critical for the establishment of plant–bacteria
interactions that represent a key determinant of plant health and productivity. Plants …

Species-and site-specific genome editing in complex bacterial communities

BE Rubin, S Diamond, BF Cress, A Crits-Christoph… - Nature …, 2022 - nature.com
Understanding microbial gene functions relies on the application of experimental genetics in
cultured microorganisms. However, the vast majority of bacteria and archaea remain …

A bacterial pan-genome makes gene essentiality strain-dependent and evolvable

F Rosconi, E Rudmann, J Li, D Surujon, J Anthony… - Nature …, 2022 - nature.com
Many bacterial species are represented by a pan-genome, whose genetic repertoire far
outstrips that of any single bacterial genome. Here we investigate how a bacterial pan …

Cross-species RNA-seq for deciphering host–microbe interactions

AJ Westermann, J Vogel - Nature Reviews Genetics, 2021 - nature.com
The human body is constantly exposed to microorganisms, which entails manifold
interactions between human cells and diverse commensal or pathogenic bacteria. The …

Decoding the microbiome: advances in genetic manipulation for gut bacteria

Z Chen, W Jin, A Hoover, Y Chao, Y Ma - Trends in Microbiology, 2023 - cell.com
Studies of the gut microbiota have revealed associations between specific bacterial species
or community compositions with health and disease, yet the causal mechanisms underlying …

Antimicrobial resistance and inorganic nanoparticles

AS Balderrama-González, HA Piñón-Castillo… - International journal of …, 2021 - mdpi.com
Antibiotics are being less effective, which leads to high mortality in patients with infections
and a high cost for the recovery of health, and the projections that are had for the future are …

The association between biofilm formation and antimicrobial resistance with possible ingenious bio-remedial approaches

Y Dutt, R Dhiman, T Singh, A Vibhuti, A Gupta… - Antibiotics, 2022 - mdpi.com
Biofilm has garnered a lot of interest due to concerns in various sectors such as public
health, medicine, and the pharmaceutical industry. Biofilm-producing bacteria show a …

Deciphering the quorum-sensing lexicon of the gut microbiota

RA Oliveira, V Cabral, I Torcato, KB Xavier - Cell Host & Microbe, 2023 - cell.com
The enduring coexistence between the gut microbiota and the host has led to a symbiotic
relationship that benefits both parties. In this complex, multispecies environment, bacteria …

CRISPRi-seq for genome-wide fitness quantification in bacteria

V de Bakker, X Liu, AM Bravo, JW Veening - Nature Protocols, 2022 - nature.com
CRISPR interference (CRISPRi) is a powerful tool to link essential and nonessential genes
to specific phenotypes and to explore their functions. Here we describe a protocol for …