Yersinia pestis: the natural history of plague

R Barbieri, M Signoli, D Chevé… - Clinical microbiology …, 2020 - Am Soc Microbiol
SUMMARY The Gram-negative bacterium Yersinia pestis is responsible for deadly plague, a
zoonotic disease established in stable foci in the Americas, Africa, and Eurasia. Its …

Yersinia pestis and plague: an updated view on evolution, virulence determinants, immune subversion, vaccination, and diagnostics

CE Demeure, O Dussurget, G Mas Fiol… - Genes & …, 2019 - nature.com
Plague is a vector-borne disease caused by Yersinia pestis. Transmitted by fleas from
rodent reservoirs, Y. pestis emerged< 6000 years ago from an enteric bacterial ancestor …

The source of the Black Death in fourteenth-century central Eurasia

MA Spyrou, L Musralina, GA Gnecchi Ruscone… - Nature, 2022 - nature.com
The origin of the medieval Black Death pandemic (ad 1346–1353) has been a topic of
continuous investigation because of the pandemic's extensive demographic impact and long …

The EnteroBase user's guide, with case studies on Salmonella transmissions, Yersinia pestis phylogeny, and Escherichia core genomic diversity

Z Zhou, NF Alikhan, K Mohamed, Y Fan… - Genome …, 2020 - genome.cshlp.org
EnteroBase is an integrated software environment that supports the identification of global
population structures within several bacterial genera that include pathogens. Here, we …

Genome-based phylogeny and taxonomy of the 'Enterobacteriales': proposal for Enterobacterales ord. nov. divided into the families Enterobacteriaceae, Erwiniaceae …

M Adeolu, S Alnajar, S Naushad… - … journal of systematic …, 2016 - microbiologyresearch.org
Understanding of the phylogeny and interrelationships of the genera within the order
'Enterobacteriales' has proven difficult using the 16S rRNA gene and other single-gene or …

[HTML][HTML] Anvi'o: an advanced analysis and visualization platform for 'omics data

AM Eren, ÖC Esen, C Quince, JH Vineis, HG Morrison… - PeerJ, 2015 - peerj.com
Advances in high-throughput sequencing and 'omics technologies are revolutionizing
studies of naturally occurring microbial communities. Comprehensive investigations of …

[HTML][HTML] Emergence and spread of basal lineages of Yersinia pestis during the Neolithic decline

N Rascovan, KG Sjögren, K Kristiansen, R Nielsen… - Cell, 2019 - cell.com
Summary Between 5,000 and 6,000 years ago, many Neolithic societies declined
throughout western Eurasia due to a combination of factors that are still largely debated …

[HTML][HTML] Early divergent strains of Yersinia pestis in Eurasia 5,000 years ago

S Rasmussen, ME Allentoft, K Nielsen, L Orlando… - Cell, 2015 - cell.com
The bacteria Yersinia pestis is the etiological agent of plague and has caused human
pandemics with millions of deaths in historic times. How and when it originated remains …

Ancient pathogen genomics as an emerging tool for infectious disease research

MA Spyrou, KI Bos, A Herbig, J Krause - Nature Reviews Genetics, 2019 - nature.com
Over the past decade, a genomics revolution, made possible through the development of
high-throughput sequencing, has triggered considerable progress in the study of ancient …

Genomic variation landscape of the human gut microbiome

S Schloissnig, M Arumugam, S Sunagawa, M Mitreva… - Nature, 2013 - nature.com
Whereas large-scale efforts have rapidly advanced the understanding and practical impact
of human genomic variation, the practical impact of variation is largely unexplored in the …