Loop dynamics and the evolution of enzyme activity
In the early 2000s, Tawfik presented his 'New View'on enzyme evolution, highlighting the
role of conformational plasticity in expanding the functional diversity of limited repertoires of …
role of conformational plasticity in expanding the functional diversity of limited repertoires of …
Engineering biomaterials for the recovery of rare earth elements
The escalating global demand for rare earth elements (REEs) and the overabundance of
REE-containing waste require innovative technologies for REE recovery from waste to …
REE-containing waste require innovative technologies for REE recovery from waste to …
Mechanisms of protein evolution
How do proteins evolve? How do changes in sequence mediate changes in protein
structure, and in turn in function? This question has multiple angles, ranging from …
structure, and in turn in function? This question has multiple angles, ranging from …
Functional roles of enzyme dynamics in accelerating active site chemistry: Emerging techniques and changing concepts
S Gao, JP Klinman - Current opinion in structural biology, 2022 - Elsevier
With the growing acceptance of the contribution of protein conformational ensembles to
enzyme catalysis and regulation, research in the field of protein dynamics has shifted toward …
enzyme catalysis and regulation, research in the field of protein dynamics has shifted toward …
Computer-aided understanding and engineering of enzymatic selectivity
L Wu, L Qin, Y Nie, Y Xu, YL Zhao - Biotechnology Advances, 2022 - Elsevier
Abstract Enzymes offering chemo-, regio-, and stereoselectivity enable the asymmetric
synthesis of high-value chiral molecules. Unfortunately, the drawback that naturally …
synthesis of high-value chiral molecules. Unfortunately, the drawback that naturally …
Exploiting enzyme evolution for computational protein design
GP Pinto, M Corbella, AO Demkiv… - Trends in Biochemical …, 2022 - cell.com
Recent years have seen an explosion of interest in understanding the physicochemical
parameters that shape enzyme evolution, as well as substantial advances in computational …
parameters that shape enzyme evolution, as well as substantial advances in computational …
Computational design of soluble functional analogues of integral membrane proteins
De novo design of complex protein folds using solely computational means remains a
significant challenge. Here, we use a robust deep learning pipeline to design complex folds …
significant challenge. Here, we use a robust deep learning pipeline to design complex folds …
Enzyme function and evolution through the lens of bioinformatics
AJM Ribeiro, IG Riziotis, N Borkakoti… - Biochemical …, 2023 - portlandpress.com
Enzymes have been shaped by evolution over billions of years to catalyse the chemical
reactions that support life on earth. Dispersed in the literature, or organised in online …
reactions that support life on earth. Dispersed in the literature, or organised in online …
[HTML][HTML] The stability landscape of de novo TIM barrels explored by a modular design approach
S Romero-Romero, M Costas, DAS Manzano… - Journal of Molecular …, 2021 - Elsevier
The ability to design stable proteins with custom-made functions is a major goal in
biochemistry with practical relevance for our environment and society. Understanding and …
biochemistry with practical relevance for our environment and society. Understanding and …
Exploring the protein sequence space with global generative models
S Romero-Romero, S Lindner… - Cold Spring Harbor …, 2023 - cshperspectives.cshlp.org
Recent advancements in specialized large-scale architectures for training images and
language have profoundly impacted the field of computer vision and natural language …
language have profoundly impacted the field of computer vision and natural language …