Toward merging untargeted and targeted methods in mass spectrometry-based metabolomics and lipidomics

T Cajka, O Fiehn - Analytical chemistry, 2016 - ACS Publications
Advances in mass spectrometry (MS) and data processing have led to discoveries in
regulation of cellular metabolism by using metabolomics and lipidomics approaches. 1, 2 …

Ion mobility mass spectrometry in the omics era: Challenges and opportunities for metabolomics and lipidomics

G Paglia, AJ Smith, G Astarita - Mass Spectrometry Reviews, 2022 - Wiley Online Library
Researchers worldwide are taking advantage of novel, commercially available,
technologies, such as ion mobility mass spectrometry (IM‐MS), for metabolomics and …

Dietary methionine influences therapy in mouse cancer models and alters human metabolism

X Gao, SM Sanderson, Z Dai, MA Reid, DE Cooper… - Nature, 2019 - nature.com
Nutrition exerts considerable effects on health, and dietary interventions are commonly used
to treat diseases of metabolic aetiology. Although cancer has a substantial metabolic …

Metabolomics: a primer

X Liu, JW Locasale - Trends in biochemical sciences, 2017 - cell.com
Metabolomics generates a profile of small molecules that are derived from cellular
metabolism and can directly reflect the outcome of complex networks of biochemical …

Epigenomic reprogramming during pancreatic cancer progression links anabolic glucose metabolism to distant metastasis

OG McDonald, X Li, T Saunders, R Tryggvadottir… - Nature …, 2017 - nature.com
During the progression of pancreatic ductal adenocarcinoma (PDAC), heterogeneous
subclonal populations emerge that drive primary tumor growth, regional spread, distant …

Histone methylation dynamics and gene regulation occur through the sensing of one-carbon metabolism

SJ Mentch, M Mehrmohamadi, L Huang, X Liu, D Gupta… - Cell metabolism, 2015 - cell.com
Summary S-adenosylmethionine (SAM) and S-adenosylhomocysteine (SAH) link one-
carbon metabolism to methylation status. However, it is unknown whether regulation of SAM …

[HTML][HTML] The nucleotide sensor ZBP1 and kinase RIPK3 induce the enzyme IRG1 to promote an antiviral metabolic state in neurons

BP Daniels, SB Kofman, JR Smith, GT Norris… - Immunity, 2019 - cell.com
As long-lived post-mitotic cells, neurons employ unique strategies to resist pathogen
infection while preserving cellular function. Here, using a murine model of Zika virus (ZIKV) …

Metabolic programming and PDHK1 control CD4+ T cell subsets and inflammation

VA Gerriets, RJ Kishton, AG Nichols… - The Journal of …, 2015 - Am Soc Clin Investig
Activation of CD4+ T cells results in rapid proliferation and differentiation into effector and
regulatory subsets. CD4+ effector T cell (Teff)(Th1 and Th17) and Treg subsets are …

Regional glutamine deficiency in tumours promotes dedifferentiation through inhibition of histone demethylation

M Pan, MA Reid, XH Lowman, RP Kulkarni… - Nature cell …, 2016 - nature.com
Poorly organized tumour vasculature often results in areas of limited nutrient supply and
hypoxia. Despite our understanding of solid tumour responses to hypoxia, how nutrient …

Fibroblasts mobilize tumor cell glycogen to promote proliferation and metastasis

M Curtis, HA Kenny, B Ashcroft, A Mukherjee… - Cell metabolism, 2019 - cell.com
Successful metastasis requires the co-evolution of stromal and cancer cells. We used stable
isotope labeling of amino acids in cell culture coupled with quantitative, label-free …