Noise and robustness in prokaryotic regulatory networks

R Silva-Rocha, V de Lorenzo - Annual review of microbiology, 2010 - annualreviews.org
Robustness is the quality of any relational object (biological or otherwise) to maintain its
components, its structure, and its function despite both external changes and endogenous …

Unraveling the functions of uncharacterized transcription factors in Escherichia coli using ChIP-exo

Y Gao, HG Lim, H Verkler, R Szubin… - Nucleic Acids …, 2021 - academic.oup.com
Bacteria regulate gene expression to adapt to changing environments through
transcriptional regulatory networks (TRNs). Although extensively studied, no TRN is fully …

Common patterns–unique features: nitrogen metabolism and regulation in Gram-positive bacteria

J Amon, F Titgemeyer… - FEMS microbiology …, 2010 - academic.oup.com
Gram-positive bacteria have developed elaborate mechanisms to control ammonium
assimilation, at the levels of both transcription and enzyme activity. In this review, the …

Transcriptional regulation of gene expression in Corynebacterium glutamicum: the role of global, master and local regulators in the modular and hierarchical gene …

J Schröder, A Tauch - FEMS microbiology reviews, 2010 - academic.oup.com
The genus Corynebacterium belongs to the taxonomic class Actinobacteria representing the
high G+ C branch of gram-positive bacteria. Among the most prominent members of this …

Structural insights into the DNA recognition mechanism by the bacterial transcription factor PdxR

I Freda, C Exertier, A Barile… - Nucleic Acids …, 2023 - academic.oup.com
Specificity in protein–DNA recognition arises from the synergy of several factors that stem
from the structural and chemical signatures encoded within the targeted DNA molecule …

Sequence-independent and reversible photocontrol of transcription/expression systems using a photosensitive nucleic acid binder

A Estévez-Torres, C Crozatier… - Proceedings of the …, 2009 - National Acad Sciences
To understand non-trivial biological functions, it is crucial to develop minimal synthetic
models that capture their basic features. Here, we demonstrate a sequence-independent …

Microbial engineering strategies to improve cell viability for biochemical production

TM Lo, WS Teo, H Ling, B Chen, A Kang… - Biotechnology …, 2013 - Elsevier
Efficient production of biochemicals using engineered microbes as whole-cell biocatalysts
requires robust cell viability. Robust viability leads to high productivity and improved …

Synthetic biology: tools to design, build, and optimize cellular processes

E Young, H Alper - BioMed Research International, 2010 - Wiley Online Library
The general central dogma frames the emergent properties of life, which make biology both
necessary and difficult to engineer. In a process engineering paradigm, each biological …

Sensing, Signaling, and Secretion: A Review and Analysis of Systems for Regulating Host Interaction in Wolbachia

ARI Lindsey - Genes, 2020 - mdpi.com
Wolbachia (Anaplasmataceae) is an endosymbiont of arthropods and nematodes that
resides within host cells and is well known for manipulating host biology to facilitate …

Engineered autonomous dynamic regulation of metabolic flux

M Ream, KLJ Prather - Nature Reviews Bioengineering, 2024 - nature.com
Metabolic engineering is a powerful tool to reprogramme cells to produce value-added
chemicals. Such engineering strategies require the fine-tuning of a cell's metabolism to …