Noise and robustness in prokaryotic regulatory networks
R Silva-Rocha, V de Lorenzo - Annual review of microbiology, 2010 - annualreviews.org
Robustness is the quality of any relational object (biological or otherwise) to maintain its
components, its structure, and its function despite both external changes and endogenous …
components, its structure, and its function despite both external changes and endogenous …
Unraveling the functions of uncharacterized transcription factors in Escherichia coli using ChIP-exo
Y Gao, HG Lim, H Verkler, R Szubin… - Nucleic Acids …, 2021 - academic.oup.com
Bacteria regulate gene expression to adapt to changing environments through
transcriptional regulatory networks (TRNs). Although extensively studied, no TRN is fully …
transcriptional regulatory networks (TRNs). Although extensively studied, no TRN is fully …
Common patterns–unique features: nitrogen metabolism and regulation in Gram-positive bacteria
J Amon, F Titgemeyer… - FEMS microbiology …, 2010 - academic.oup.com
Gram-positive bacteria have developed elaborate mechanisms to control ammonium
assimilation, at the levels of both transcription and enzyme activity. In this review, the …
assimilation, at the levels of both transcription and enzyme activity. In this review, the …
Transcriptional regulation of gene expression in Corynebacterium glutamicum: the role of global, master and local regulators in the modular and hierarchical gene …
J Schröder, A Tauch - FEMS microbiology reviews, 2010 - academic.oup.com
The genus Corynebacterium belongs to the taxonomic class Actinobacteria representing the
high G+ C branch of gram-positive bacteria. Among the most prominent members of this …
high G+ C branch of gram-positive bacteria. Among the most prominent members of this …
Structural insights into the DNA recognition mechanism by the bacterial transcription factor PdxR
I Freda, C Exertier, A Barile… - Nucleic Acids …, 2023 - academic.oup.com
Specificity in protein–DNA recognition arises from the synergy of several factors that stem
from the structural and chemical signatures encoded within the targeted DNA molecule …
from the structural and chemical signatures encoded within the targeted DNA molecule …
Sequence-independent and reversible photocontrol of transcription/expression systems using a photosensitive nucleic acid binder
A Estévez-Torres, C Crozatier… - Proceedings of the …, 2009 - National Acad Sciences
To understand non-trivial biological functions, it is crucial to develop minimal synthetic
models that capture their basic features. Here, we demonstrate a sequence-independent …
models that capture their basic features. Here, we demonstrate a sequence-independent …
Microbial engineering strategies to improve cell viability for biochemical production
Efficient production of biochemicals using engineered microbes as whole-cell biocatalysts
requires robust cell viability. Robust viability leads to high productivity and improved …
requires robust cell viability. Robust viability leads to high productivity and improved …
Synthetic biology: tools to design, build, and optimize cellular processes
The general central dogma frames the emergent properties of life, which make biology both
necessary and difficult to engineer. In a process engineering paradigm, each biological …
necessary and difficult to engineer. In a process engineering paradigm, each biological …
Sensing, Signaling, and Secretion: A Review and Analysis of Systems for Regulating Host Interaction in Wolbachia
ARI Lindsey - Genes, 2020 - mdpi.com
Wolbachia (Anaplasmataceae) is an endosymbiont of arthropods and nematodes that
resides within host cells and is well known for manipulating host biology to facilitate …
resides within host cells and is well known for manipulating host biology to facilitate …
Engineered autonomous dynamic regulation of metabolic flux
M Ream, KLJ Prather - Nature Reviews Bioengineering, 2024 - nature.com
Metabolic engineering is a powerful tool to reprogramme cells to produce value-added
chemicals. Such engineering strategies require the fine-tuning of a cell's metabolism to …
chemicals. Such engineering strategies require the fine-tuning of a cell's metabolism to …