Quantitative proteomic analysis of histone modifications

H Huang, S Lin, BA Garcia, Y Zhao - Chemical reviews, 2015 - ACS Publications
Several mechanisms have been proposed for histone marks to exert their functions,
including altering the physical properties of nucleosomes by neutralization of charge via …

Utilizing proteomics to identify and optimize microalgae strains for high-quality dietary protein: A review

S Hamzelou, D Belobrajdic, JA Broadbent… - Critical Reviews in …, 2024 - Taylor & Francis
Algae-derived protein has immense potential to provide high-quality protein foods for the
expanding human population. To meet its potential, a broad range of scientific tools are …

Multivalent histone and DNA engagement by a PHD/BRD/PWWP triple reader cassette recruits ZMYND8 to K14ac-rich chromatin

P Savitsky, T Krojer, T Fujisawa, JP Lambert, S Picaud… - Cell reports, 2016 - cell.com
Elucidation of interactions involving DNA and histone post-translational-modifications
(PTMs) is essential for providing insights into complex biological functions. Reader …

Progress in epigenetic histone modification analysis by mass spectrometry for clinical investigations

Ö Önder, S Sidoli, M Carroll… - Expert review of proteomics, 2015 - Taylor & Francis
Chromatin biology and epigenetics are scientific fields that are rapid expanding due to their
fundamental role in understanding cell development, heritable characters and progression …

Autoacetylation of the histone acetyltransferase Rtt109

BN Albaugh, KM Arnold, S Lee, JM Denu - Journal of Biological Chemistry, 2011 - ASBMB
Rtt109 is a yeast histone acetyltransferase (HAT) that associates with histone chaperones
Asf1 and Vps75 to acetylate H3K56, H3K9, and H3K27 and is important in DNA replication …

Using ATCLSTM-Kcr to predict and generate the human lysine crotonylation database

YH Yang, SF Wu, J Kong, YP Zhu, JF Liu, JT Yang - Journal of Proteomics, 2023 - Elsevier
Lysine crotonylation (Kcr) is an evolutionarily conserved protein post-translational
modifications, which plays an important role in cellular physiology and pathology, such as …

Mass spectrometry for the quantification of bioactive peptides in biological fluids

C Tamvakopoulos - Mass spectrometry reviews, 2007 - Wiley Online Library
The study of pharmacologically active peptides is central to the understanding of disease
and development of novel therapies. It would be advantageous to monitor the fate of …

[HTML][HTML] Combinatorial effects of four histone modifications in transcription and differentiation

JJ Fischer, J Toedling, T Krueger, M Schueler, W Huber… - Genomics, 2008 - Elsevier
Nucleosomes are involved in DNA compaction and transcriptional regulation. Yet it is
unclear whether histone modification marks are primary or secondary to transcription and …

Robust methods for purification of histones from cultured mammalian cells with the preservation of their native modifications

P Rodriguez-Collazo, SH Leuba… - Nucleic acids …, 2009 - academic.oup.com
Post-translational modifications (PTMs) of histones play a role in modifying chromatin
structure for DNA-templated processes in the eukaryotic nucleus, such as transcription …

Catalytic activation of histone acetyltransferase Rtt109 by a histone chaperone

EM Kolonko, BN Albaugh, SE Lindner… - Proceedings of the …, 2010 - National Acad Sciences
Most histone acetyltransferases (HATs) function as multisubunit complexes in which
accessory proteins regulate substrate specificity and catalytic efficiency. Rtt109 is a …