Determinants of genetic diversity

H Ellegren, N Galtier - Nature Reviews Genetics, 2016 - nature.com
Genetic polymorphism varies among species and within genomes, and has important
implications for the evolution and conservation of species. The determinants of this variation …

Interpreting the genomic landscape of speciation: a road map for finding barriers to gene flow

M Ravinet, R Faria, RK Butlin, J Galindo… - Journal of …, 2017 - academic.oup.com
Speciation, the evolution of reproductive isolation among populations, is continuous,
complex, and involves multiple, interacting barriers. Until it is complete, the effects of this …

[HTML][HTML] 1,135 genomes reveal the global pattern of polymorphism in Arabidopsis thaliana

C Alonso-Blanco, J Andrade, C Becker, F Bemm… - Cell, 2016 - cell.com
Arabidopsis thaliana serves as a model organism for the study of fundamental physiological,
cellular, and molecular processes. It has also greatly advanced our understanding of …

Visualizing spatial population structure with estimated effective migration surfaces

D Petkova, J Novembre, M Stephens - Nature genetics, 2016 - nature.com
Genetic data often exhibit patterns broadly consistent with'isolation by distance'—a
phenomenon where genetic similarity decays with geographic distance. In a heterogeneous …

[HTML][HTML] Genome-wide association studies in plant pathosystems: success or failure?

C Demirjian, F Vailleau, R Berthomé, F Roux - Trends in plant science, 2023 - cell.com
Harnessing natural genetic variation is an established alternative to artificial genetic
variation for investigating the molecular dialog between partners in plant pathosystems …

Genome-wide association studies of 14 agronomic traits in rice landraces

X Huang, X Wei, T Sang, Q Zhao, QI Feng, Y Zhao… - Nature …, 2010 - nature.com
Uncovering the genetic basis of agronomic traits in crop landraces that have adapted to
various agro-climatic conditions is important to world food security. Here we have …

[HTML][HTML] SNPhylo: a pipeline to construct a phylogenetic tree from huge SNP data

TH Lee, H Guo, X Wang, C Kim, AH Paterson - BMC genomics, 2014 - Springer
Background Phylogenetic trees are widely used for genetic and evolutionary studies in
various organisms. Advanced sequencing technology has dramatically enriched data …

Genome-wide association study of 107 phenotypes in Arabidopsis thaliana inbred lines

S Atwell, YS Huang, BJ Vilhjálmsson, G Willems… - Nature, 2010 - nature.com
Although pioneered by human geneticists as a potential solution to the challenging problem
of finding the genetic basis of common human diseases,, genome-wide association (GWA) …

Whole-genome sequencing of multiple Arabidopsis thaliana populations

J Cao, K Schneeberger, S Ossowski, T Günther… - Nature …, 2011 - nature.com
The plant Arabidopsis thaliana occurs naturally in many different habitats throughout
Eurasia. As a foundation for identifying genetic variation contributing to adaptation to diverse …

CLUMPP: a cluster matching and permutation program for dealing with label switching and multimodality in analysis of population structure

M Jakobsson, NA Rosenberg - Bioinformatics, 2007 - academic.oup.com
Motivation: Clustering of individuals into populations on the basis of multilocus genotypes is
informative in a variety of settings. In population-genetic clustering algorithms, such as …