[HTML][HTML] Network analysis methods for studying microbial communities: A mini review

MS Matchado, M Lauber, S Reitmeier… - Computational and …, 2021 - Elsevier
Microorganisms including bacteria, fungi, viruses, protists and archaea live as communities
in complex and contiguous environments. They engage in numerous inter-and intra …

Responses to drought stress in poplar: what do we know and what can we learn?

L Rosso, S Cantamessa, S Bergante, C Biselli… - Life, 2023 - mdpi.com
Poplar (Populus spp.) is a high-value crop for wood and biomass production and a model
organism for tree physiology and genomics. The early release, in 2006, of the complete …

Soil origin and plant genotype structure distinct microbiome compartments in the model legume Medicago truncatula

SP Brown, MA Grillo, JC Podowski, KD Heath - Microbiome, 2020 - Springer
Background Understanding the genetic and environmental factors that structure plant
microbiomes is necessary for leveraging these interactions to address critical needs in …

Contributions of ectomycorrhizal fungi in a reclaimed poplar forest (Populus yunnanensis) in an abandoned metal mine tailings pond, southwest China

Y Xiao, C Liu, N Hu, B Wang, K Zheng, Z Zhao… - Journal of Hazardous …, 2023 - Elsevier
Reclamation using fast-growing trees has great potential for agroforestry development on
former non-ferrous metal mining areas. However, the functional traits of ectomycorrhizal …

Possible role of arbuscular mycorrhizal fungi and associated bacteria in the recruitment of endophytic bacterial communities by plant roots

G Ujvári, A Turrini, L Avio, M Agnolucci - Mycorrhiza, 2021 - Springer
Arbuscular mycorrhizal fungi (AMF) represent an important group of root symbionts, given
the key role they play in the enhancement of plant nutrition, health, and product quality. The …

Engineering the plant microenvironment to facilitate plant-growth-promoting microbe association

AT Zvinavashe, I Mardad, M Mhada… - Journal of Agricultural …, 2021 - ACS Publications
New technologies that enhance soil biodiversity and minimize the use of scarce resources
while boosting crop production are highly sought to mitigate the increasing threats that …

The Bacterial Microbiome of Meloidogyne-Based Disease Complex in Coffee and Tomato

A Lamelas, D Desgarennes, D López-Lima… - Frontiers in Plant …, 2020 - frontiersin.org
The Meloidogyne-based disease complexes (MDCs) are caused by the interaction of
different root-knot nematode species and phytopathogenic fungi. These complexes are …

Optimizing Intercropping Systems of Black Cumin (Nigella sativa L.) and Fenugreek (Trigonella foenum‐graecum L.) through Inoculation with Bacteria and …

E Rezaei‐Chiyaneh, ML Battaglia… - Advanced …, 2021 - Wiley Online Library
This study evaluates the effects of intercropping patterns, plant growth‐promoting
rhizobacteria and arbuscular mycorrhizal fungi (AMF) on seed yield and yield components of …

Seasonal dynamics of core fungi in the switchgrass phyllosphere, and co-occurrence with leaf bacteria

AW Bowsher, GMN Benucci, G Bonito… - Phytobiomes …, 2021 - Am Phytopath Society
Plant leaves harbor complex microbial communities that influence plant health and
productivity. Nevertheless, a detailed understanding of phyllosphere community assembly …

Extracting the GEMs: genotype, environment, and microbiome interactions shaping host phenotypes

BO Oyserman, V Cordovez, SS Flores… - Frontiers in …, 2021 - frontiersin.org
One of the fundamental tenets of biology is that the phenotype of an organism (Y) is
determined by its genotype (G), the environment (E), and their interaction (GE). Quantitative …