Temporal modelling using single-cell transcriptomics
J Ding, N Sharon, Z Bar-Joseph - Nature Reviews Genetics, 2022 - nature.com
Methods for profiling genes at the single-cell level have revolutionized our ability to study
several biological processes and systems including development, differentiation, response …
several biological processes and systems including development, differentiation, response …
Rise of deep learning for genomic, proteomic, and metabolomic data integration in precision medicine
D Grapov, J Fahrmann, K Wanichthanarak… - Omics: a journal of …, 2018 - liebertpub.com
Abstract Machine learning (ML) is being ubiquitously incorporated into everyday products
such as Internet search, email spam filters, product recommendations, image classification …
such as Internet search, email spam filters, product recommendations, image classification …
[HTML][HTML] Periodontal pathogens Porphyromonas gingivalis and Fusobacterium nucleatum promote tumor progression in an oral-specific chemical carcinogenesis …
AB Gallimidi, S Fischman, B Revach, R Bulvik… - Oncotarget, 2015 - ncbi.nlm.nih.gov
Oral squamous cell carcinoma (OSCC) is a lethal disease whose incidence is increasing.
Epidemiologic studies demonstrate an association between periodontitis and oral cancer …
Epidemiologic studies demonstrate an association between periodontitis and oral cancer …
[HTML][HTML] A review and tutorial of machine learning methods for microbiome host trait prediction
YH Zhou, P Gallins - Frontiers in genetics, 2019 - frontiersin.org
With the growing importance of microbiome research, there is increasing evidence that host
variation in microbial communities is associated with overall host health. Advancement in …
variation in microbial communities is associated with overall host health. Advancement in …
[PDF][PDF] Long noncoding RNA HOTTIP/HOXA13 expression is associated with disease progression and predicts outcome in hepatocellular carcinoma patients
Hepatocellular carcinoma (HCC) is among the leading causes of cancer‐related death.
Despite the advances in diagnosis and management of HCC, the biology of this tumor …
Despite the advances in diagnosis and management of HCC, the biology of this tumor …
Detection, clinical relevance and specific biological properties of disseminating tumour cells
Most cancer deaths are caused by haematogenous metastatic spread and subsequent
growth of tumour cells at distant organs. Disseminating tumour cells present in the …
growth of tumour cells at distant organs. Disseminating tumour cells present in the …
[HTML][HTML] An optimized grapevine RNA isolation procedure and statistical determination of reference genes for real-time RT-PCR during berry development
Background Accuracy in quantitative real-time RT-PCR is dependent on high quality RNA,
consistent cDNA synthesis, and validated stable reference genes for data normalization …
consistent cDNA synthesis, and validated stable reference genes for data normalization …
[HTML][HTML] Selection of reliable reference genes for gene expression studies in peach using real-time PCR
Z Tong, Z Gao, F Wang, J Zhou, Z Zhang - BMC molecular biology, 2009 - Springer
Background RT-qPCR is a preferred method for rapid and reliable quantification of gene
expression studies. Appropriate application of RT-qPCR in such studies requires the use of …
expression studies. Appropriate application of RT-qPCR in such studies requires the use of …
Evaluation of potential reference genes for reverse transcription-qPCR studies of physiological responses in Drosophila melanogaster
Drosophila melanogaster is one of the most important genetic models and techniques such
as reverse transcription quantitative real-time PCR (RT-qPCR) are being employed …
as reverse transcription quantitative real-time PCR (RT-qPCR) are being employed …
[HTML][HTML] Selection of reference genes for gene expression studies in pig tissues using SYBR green qPCR
AB Nygard, CB Jørgensen, S Cirera, M Fredholm - BMC molecular biology, 2007 - Springer
Background Real-time quantitative PCR (qPCR) is a method for rapid and reliable
quantification of mRNA transcription. Internal standards such as reference genes are used to …
quantification of mRNA transcription. Internal standards such as reference genes are used to …