Comparative genomics of muskmelon reveals a potential role for retrotransposons in the modification of gene expression
R Yano, T Ariizumi, S Nonaka, Y Kawazu… - Communications …, 2020 - nature.com
Melon exhibits substantial natural variation especially in fruit ripening physiology, including
both climacteric (ethylene-producing) and non-climacteric types. However, genomic …
both climacteric (ethylene-producing) and non-climacteric types. However, genomic …
Non-coding RNAs and transposable elements in plant genomes: emergence, regulatory mechanisms and roles in plant development and stress responses
J Hou, D Lu, AS Mason, B Li, M Xiao, S An, D Fu - Planta, 2019 - Springer
Main conclusion This review will provide evidence for the indispensable function of these
elements in regulating plant development and resistance to biotic and abiotic stresses, as …
elements in regulating plant development and resistance to biotic and abiotic stresses, as …
Exaptation of transposable element coding sequences
Z Joly-Lopez, TE Bureau - Current opinion in genetics & development, 2018 - Elsevier
Transposable elements (TEs) are mobile genetic elements that were once perceived as
merely selfish, but are now recognized as potent agents of adaptation. One way TEs …
merely selfish, but are now recognized as potent agents of adaptation. One way TEs …
Epigenetic mechanisms of abiotic stress response and memory in plants
Being sessile organisms, plants are exposed to multiple stimuli without possibility for
escape. Therefore, plants have evolved to be able to adapt their developmental and …
escape. Therefore, plants have evolved to be able to adapt their developmental and …
Measuring performance metrics of machine learning algorithms for detecting and classifying transposable elements
S Orozco-Arias, JS Piña, R Tabares-Soto… - Processes, 2020 - mdpi.com
Because of the promising results obtained by machine learning (ML) approaches in several
fields, every day is more common, the utilization of ML to solve problems in bioinformatics. In …
fields, every day is more common, the utilization of ML to solve problems in bioinformatics. In …
Long-lasting defence priming by β-aminobutyric acid in tomato is marked by genome-wide changes in DNA methylation
Exposure of plants to stress conditions or to certain chemical elicitors can establish a primed
state, whereby responses to future stress encounters are enhanced. Stress priming can be …
state, whereby responses to future stress encounters are enhanced. Stress priming can be …
Nearby transposable elements impact plant stress gene regulatory networks: a meta-analysis in A. thaliana and S. lycopersicum
J Deneweth, Y Van de Peer, V Vermeirssen - BMC genomics, 2022 - Springer
Background Transposable elements (TE) make up a large portion of many plant genomes
and are playing innovative roles in genome evolution. Several TEs can contribute to gene …
and are playing innovative roles in genome evolution. Several TEs can contribute to gene …
The evolutionary volte-face of transposable elements: from harmful jumping genes to major drivers of genetic innovation
Transposable elements (TEs) are self-replicating DNA elements that constitute major
fractions of eukaryote genomes. Their ability to transpose can modify the genome structure …
fractions of eukaryote genomes. Their ability to transpose can modify the genome structure …
The CERV protein of Cer1, a C. elegans LTR retrotransposon, is required for nuclear export of viral genomic RNA and can form giant nuclear rods
B Sun, H Kim, CC Mello, JR Priess - PLoS Genetics, 2023 - journals.plos.org
Retroviruses and closely related LTR retrotransposons export full-length, unspliced genomic
RNA (gRNA) for packaging into virions and to serve as the mRNA encoding GAG and POL …
RNA (gRNA) for packaging into virions and to serve as the mRNA encoding GAG and POL …
Emerging roles of chromatin in the maintenance of genome organization and function in plants
Z Vergara, C Gutierrez - Genome Biology, 2017 - Springer
Chromatin is not a uniform macromolecular entity; it contains different domains
characterized by complex signatures of DNA and histone modifications. Such domains are …
characterized by complex signatures of DNA and histone modifications. Such domains are …