[HTML][HTML] How myosin VI traps its off-state, is activated and dimerizes

L Canon, C Kikuti, VJ Planelles-Herrero, T Lin… - Nature …, 2023 - nature.com
Myosin VI (Myo6) is the only minus-end directed nanomotor on actin, allowing it to uniquely
contribute to numerous cellular functions. As for other nanomotors, the proper functioning of …

[HTML][HTML] Low cell number proteomic analysis using in-cell protease digests reveals a robust signature for cell cycle state classification

V Kelly, A Al-Rawi, D Lewis, G Kustatscher… - Molecular & Cellular …, 2022 - ASBMB
Comprehensive proteome analysis of rare cell phenotypes remains a significant challenge.
We report a method for low cell number MS-based proteomics using protease digestion of …

[HTML][HTML] Size-exclusion chromatography combined with DIA-MS enables deep proteome profiling of extracellular vesicles from melanoma plasma and serum

E Lattmann, L Räss, M Tognetti, JMM Gómez… - Cellular and Molecular …, 2024 - Springer
Extracellular vesicles (EVs) are important players in melanoma progression, but their use as
clinical biomarkers has been limited by the difficulty of profiling blood-derived EV proteins …

[HTML][HTML] Insight into the metabolic adaptations of electrically pulse-stimulated human myotubes using global analysis of the transcriptome and proteome

AM Mengeste, N Nikolić, A Dalmao Fernandez… - Frontiers in …, 2022 - frontiersin.org
Electrical pulse stimulation (EPS) has proven to be a useful tool to interrogate cell-specific
responses to muscle contraction. In the present study, we aimed to uncover networks of …

[HTML][HTML] Compatible solutes determine the heat resistance of conidia

SJ Seekles, T van den Brule, M Punt… - Fungal Biology and …, 2023 - Springer
Background Asexually developed fungal spores (conidia) are key for the massive
proliferation and dispersal of filamentous fungi. Germination of conidia and subsequent …

[HTML][HTML] Comparison of SPEED, S-Trap, and in-solution-based sample preparation methods for mass spectrometry in kidney tissue and plasma

EM Templeton, AP Pilbrow, T Kleffmann… - International journal of …, 2023 - mdpi.com
Mass spectrometry is a powerful technique for investigating renal pathologies and
identifying biomarkers, and efficient protein extraction from kidney tissue is essential for …

[HTML][HTML] Fatty acids abrogate the growth-suppressive effects induced by inhibition of cholesterol flux in pancreatic cancer cells

Y Li, M Amrutkar, AV Finstadsveen, KT Dalen… - Cancer Cell …, 2023 - Springer
Background Despite therapeutic advances, the prognosis of pancreatic ductal
adenocarcinoma (PDAC) remains extremely poor. Metabolic reprogramming is increasingly …

[HTML][HTML] Proteomic analysis identifies dysregulated proteins and associated molecular pathways in a cohort of gallbladder cancer patients of African ancestry

P Baichan, P Naicker, TN Augustine, M Smith… - Clinical Proteomics, 2023 - Springer
Background Gallbladder cancer (GBC) is a lethal cancer with a poor prognosis. The lack of
specific and sensitive biomarkers results in delayed diagnosis with most patients presenting …

[HTML][HTML] Formation, characterization and modeling of emergent synthetic microbial communities

J Wang, DL Carper, LH Burdick, HK Shrestha… - Computational and …, 2021 - Elsevier
Microbial communities colonize plant tissues and contribute to host function. How these
communities form and how individual members contribute to shaping the microbial …

Automated proteomics workflows for high-throughput library generation and biomarker detection using data-independent acquisition

S Paramasivan, JL Morrison, MC Lock… - Journal of proteome …, 2023 - ACS Publications
Sequential window acquisition of all theoretical mass spectra-mass spectrometry
underpinned by advanced bioinformatics offers a framework for comprehensive analysis of …