Gut microbiota and its metabolites in depression: from pathogenesis to treatment

L Liu, H Wang, X Chen, Y Zhang, H Zhang, P Xie - EBioMedicine, 2023 - thelancet.com
Major depressive disorder is one of the most disabling mental disorders worldwide.
Increasing preclinical and clinical studies have highlighted that compositional and functional …

Frenemies of the soil: Bacillus and Pseudomonas interspecies interactions

M Lyng, ÁT Kovács - Trends in Microbiology, 2023 - cell.com
Bacillus and Pseudomonas ubiquitously occur in natural environments and are two of the
most intensively studied bacterial genera in the soil. They are often coisolated from …

Microbiome diversity protects against pathogens by nutrient blocking

F Spragge, E Bakkeren, MT Jahn, E BN Araujo… - Science, 2023 - science.org
The human gut microbiome plays an important role in resisting colonization of the host by
pathogens, but we lack the ability to predict which communities will be protective. We …

Top-down identification of keystone taxa in the microbiome

G Amit, A Bashan - Nature Communications, 2023 - nature.com
Keystone taxa in ecological communities are native taxa that play an especially important
role in the stability of their ecosystem. However, we still lack an effective framework for …

Collective dynamics of swarmalators with higher-order interactions

MS Anwar, GK Sar, M Perc, D Ghosh - Communications Physics, 2024 - nature.com
Higher-order interactions shape collective dynamics, but how they affect transitions between
different states in swarmalator systems is yet to be determined. To that effect, we here study …

Sparse species interactions reproduce abundance correlation patterns in microbial communities

J Camacho-Mateu, A Lampo, M Sireci… - Proceedings of the …, 2024 - National Acad Sciences
During the last decades, macroecology has identified broad-scale patterns of abundances
and diversity of microbial communities and put forward some potential explanations for …

Synthetic plant microbiota challenges in nonmodel species

F Vaccaro, L Cangioli, A Mengoni, C Fagorzi - Trends in Microbiology, 2022 - cell.com
Plant-associated microbiota are becoming central in the development of ways to improve
plant productivity and health. However, most research has focussed mainly on a few model …

Learning beyond-pairwise interactions enables the bottom–up prediction of microbial community structure

H Ishizawa, Y Tashiro, D Inoue… - Proceedings of the …, 2024 - National Acad Sciences
Understanding the assembly of multispecies microbial communities represents a significant
challenge in ecology and has wide applications in agriculture, wastewater treatment, and …

Facemask acne attenuation through modulation of indirect microbiome interactions

HH Na, S Kim, JS Kim, S Lee, Y Kim, SH Kim… - npj Biofilms and …, 2024 - nature.com
During the COVID-19 pandemic, facemasks played a pivotal role in preventing person-
person droplet transmission of viral particles. However, prolonged facemask wearing causes …

HONMF: integration analysis of multi-omics microbiome data via matrix factorization and hypergraph

Y Ma, L Liu, Y Ma, S Zhang - Bioinformatics, 2023 - academic.oup.com
Motivation The accumulation of multi-omics microbiome data provides an unprecedented
opportunity to understand the diversity of bacterial, fungal, and viral components from …