Gut microbiota and its metabolites in depression: from pathogenesis to treatment
L Liu, H Wang, X Chen, Y Zhang, H Zhang, P Xie - EBioMedicine, 2023 - thelancet.com
Major depressive disorder is one of the most disabling mental disorders worldwide.
Increasing preclinical and clinical studies have highlighted that compositional and functional …
Increasing preclinical and clinical studies have highlighted that compositional and functional …
Frenemies of the soil: Bacillus and Pseudomonas interspecies interactions
Bacillus and Pseudomonas ubiquitously occur in natural environments and are two of the
most intensively studied bacterial genera in the soil. They are often coisolated from …
most intensively studied bacterial genera in the soil. They are often coisolated from …
Microbiome diversity protects against pathogens by nutrient blocking
F Spragge, E Bakkeren, MT Jahn, E BN Araujo… - Science, 2023 - science.org
The human gut microbiome plays an important role in resisting colonization of the host by
pathogens, but we lack the ability to predict which communities will be protective. We …
pathogens, but we lack the ability to predict which communities will be protective. We …
Top-down identification of keystone taxa in the microbiome
Keystone taxa in ecological communities are native taxa that play an especially important
role in the stability of their ecosystem. However, we still lack an effective framework for …
role in the stability of their ecosystem. However, we still lack an effective framework for …
Collective dynamics of swarmalators with higher-order interactions
Higher-order interactions shape collective dynamics, but how they affect transitions between
different states in swarmalator systems is yet to be determined. To that effect, we here study …
different states in swarmalator systems is yet to be determined. To that effect, we here study …
Sparse species interactions reproduce abundance correlation patterns in microbial communities
During the last decades, macroecology has identified broad-scale patterns of abundances
and diversity of microbial communities and put forward some potential explanations for …
and diversity of microbial communities and put forward some potential explanations for …
Synthetic plant microbiota challenges in nonmodel species
Plant-associated microbiota are becoming central in the development of ways to improve
plant productivity and health. However, most research has focussed mainly on a few model …
plant productivity and health. However, most research has focussed mainly on a few model …
Learning beyond-pairwise interactions enables the bottom–up prediction of microbial community structure
H Ishizawa, Y Tashiro, D Inoue… - Proceedings of the …, 2024 - National Acad Sciences
Understanding the assembly of multispecies microbial communities represents a significant
challenge in ecology and has wide applications in agriculture, wastewater treatment, and …
challenge in ecology and has wide applications in agriculture, wastewater treatment, and …
Facemask acne attenuation through modulation of indirect microbiome interactions
HH Na, S Kim, JS Kim, S Lee, Y Kim, SH Kim… - npj Biofilms and …, 2024 - nature.com
During the COVID-19 pandemic, facemasks played a pivotal role in preventing person-
person droplet transmission of viral particles. However, prolonged facemask wearing causes …
person droplet transmission of viral particles. However, prolonged facemask wearing causes …
HONMF: integration analysis of multi-omics microbiome data via matrix factorization and hypergraph
Y Ma, L Liu, Y Ma, S Zhang - Bioinformatics, 2023 - academic.oup.com
Motivation The accumulation of multi-omics microbiome data provides an unprecedented
opportunity to understand the diversity of bacterial, fungal, and viral components from …
opportunity to understand the diversity of bacterial, fungal, and viral components from …