[HTML][HTML] Metagenomics next-generation sequencing tests take the stage in the diagnosis of lower respiratory tract infections

Z Diao, D Han, R Zhang, J Li - Journal of advanced research, 2022 - Elsevier
Background Metagenomic next-generation sequencing (mNGS) has changed the diagnosis
landscape of lower respiratory tract infections (LRIs). With the development of newer …

[HTML][HTML] CRISPR-Cas-based techniques for pathogen detection: Retrospect, recent advances, and future perspectives

T Huang, R Zhang, J Li - Journal of Advanced Research, 2023 - Elsevier
Background Early detection of pathogen-associated diseases are critical for effective
treatment. Rapid, specific, sensitive, and cost-effective diagnostic technologies continue to …

Comparison of 6 DNA extraction methods for isolation of high yield of high molecular weight DNA suitable for shotgun metagenomics Nanopore sequencing to detect …

M Gand, B Bloemen, K Vanneste, NHC Roosens… - BMC genomics, 2023 - Springer
Abstract Background Oxford Nanopore Technologies (ONT) offers an accessible platform for
long-read sequencing, which improves the reconstruction of genomes and helps to resolve …

Application of mNGS in the etiological analysis of lower respiratory tract infections and the prediction of drug resistance

H Liu, Y Zhang, J Yang, Y Liu, J Chen - Microbiology spectrum, 2022 - Am Soc Microbiol
Lower respiratory tract infections (LRTIs) have high morbidity and mortality rates. However,
traditional etiological detection methods have not been able to meet the needs for the …

Targeting RNA with next‐and third‐generation sequencing improves pathogen identification in clinical samples

N Zhao, J Cao, J Xu, B Liu, B Liu, D Chen… - Advanced …, 2021 - Wiley Online Library
Fast and accurate identification of microbial pathogens is critical for the proper treatment of
infections. Traditional culture‐based diagnosis in clinics is increasingly supplemented by …

Detection of respiratory viruses directly from clinical samples using next‐generation sequencing: A literature review of recent advances and potential for routine …

X Wang, S Stelzer‐Braid, M Scotch… - Reviews in Medical …, 2022 - Wiley Online Library
Acute respiratory infection is the third most frequent cause of mortality worldwide, causing
over 4.25 million deaths annually. Although most diagnosed acute respiratory infections are …

Metagenomic next-generation sequencing for pulmonary fungal infection diagnosis: lung biopsy versus bronchoalveolar lavage fluid

L Yang, J Song, Y Wang, J Feng - Infection and Drug Resistance, 2021 - Taylor & Francis
Purpose Metagenomic next-generation sequencing (mNGS) is widely used for pulmonary
infection; nonetheless, the experience from its clinical use in diagnosing pulmonary fungal …

Influenza A, influenza B, and SARS-CoV-2 similarities and differences–a focus on diagnosis

A Havasi, S Visan, C Cainap, SS Cainap… - Frontiers in …, 2022 - frontiersin.org
In late December 2019, the first cases of viral pneumonia caused by an unidentified
pathogen were reported in China. Two years later, SARS-CoV-2 was responsible for almost …

DCiPatho: deep cross-fusion networks for genome scale identification of pathogens

G Jiang, J Zhang, Y Zhang, X Yang, T Li… - Briefings in …, 2023 - academic.oup.com
Pathogen detection from biological and environmental samples is important for global
disease control. Despite advances in pathogen detection using deep learning, current …

The application of metagenomic next-generation sequencing in pathogen diagnosis: a bibliometric analysis based on Web of Science

S He, J Wei, J Feng, D Liu, N Wang, L Chen… - Frontiers in Cellular …, 2023 - frontiersin.org
Background Infectious disease is a large burden on public health globally. Metagenomic
next-generation sequencing (mNGS) has become popular as a new tool for pathogen …