Whole-genome genotyping on bead arrays

KL Gunderson - DNA Microarrays for Biomedical Research: Methods …, 2009 - Springer
In this review, we describe the laboratory implementation of Infinium® whole genome
genotyping (WGG) technology for whole genome association studies and copy number …

Minisequencing on oligonucleotide microarrays: comparison of immobilisation chemistries

K Lindroos, U Liljedahl, M Raitio… - Nucleic Acids …, 2001 - academic.oup.com
In the microarray format of the minisequencing method multiple oligonucleotide primers
immobilised on a glass surface are extended with fluorescent ddNTPs using a DNA …

Dendrislides, dendrichips: a simple chemical functionalization of glass slides with phosphorus dendrimers as an effective means for the preparation of biochips

E Trévisiol, V Le Berre-Anton, J Leclaire… - New Journal of …, 2003 - pubs.rsc.org
Materials with tailored surface properties are useful for diverse applications, in particular for
adsorption and/or covalent immobilization of various biomolecules such as nucleic acids …

Competitive enzymatic reaction to control allele-specific extensions

E Hultin, M Kaller, A Ahmadian… - Nucleic acids …, 2005 - academic.oup.com
Here, we present a novel method for SNP genotyping based on protease-mediated allele-
specific primer extension (PrASE), where the two allele-specific extension primers only differ …

Rapid genotyping of blood group antigens by multiplex polymerase chain reaction and DNA microarray hybridization

SHW Beiboer, T Wieringa‐Jelsma… - …, 2005 - Wiley Online Library
BACKGROUND: In the Netherlands, 500,000 blood donors are active. Blood of all donors is
currently typed serologically for ABO, the Rh phenotype, and K. Only a subset of donors is …

Electrochemical quantification of single-nucleotide polymorphisms using nanoparticle probes

G Liu, Y Lin - Journal of the American Chemical Society, 2007 - ACS Publications
We report a new approach for electrochemical quantification of single-nucleotide
polymorphisms (SNPs) using nanoparticle probes. The principle is based on DNA …

Fast genotyping of known SNPs through approximate k-mer matching

A Shajii, D Yorukoglu, Y William Yu, B Berger - Bioinformatics, 2016 - academic.oup.com
Motivation As the volume of next-generation sequencing (NGS) data increases, faster
algorithms become necessary. Although speeding up individual components of a sequence …

Robust SNP genotyping by multiplex PCR and arrayed primer extension

M Podder, J Ruan, BW Tripp, ZE Chu… - BMC Medical …, 2008 - Springer
Background Arrayed primer extension (APEX) is a microarray-based rapid minisequencing
methodology that may have utility in'personalized medicine'applications that involve genetic …

Effects of DNA mass on multiple displacement whole genome amplification and genotyping performance

AW Bergen, Y Qi, KA Haque, RA Welch, SJ Chanock - BMC biotechnology, 2005 - Springer
Background Whole genome amplification (WGA) promises to eliminate practical molecular
genetic analysis limitations associated with genomic DNA (gDNA) quantity. We evaluated …

Modified oligonucleotides for mismatch discrimination

RO Dempcy, AA Gall, SG Lokhov, IA Afonina… - US Patent …, 2006 - Google Patents
US7045610B2 - Modified oligonucleotides for mismatch discrimination - Google Patents
US7045610B2 - Modified oligonucleotides for mismatch discrimination - Google Patents …