Incongruence in the phylogenomics era

JL Steenwyk, Y Li, X Zhou, XX Shen… - Nature Reviews Genetics, 2023 - nature.com
Genome-scale data and the development of novel statistical phylogenetic approaches have
greatly aided the reconstruction of a broad sketch of the tree of life and resolved many of its …

Formation of the Isthmus of Panama

A O'Dea, HA Lessios, AG Coates, RI Eytan… - Science …, 2016 - science.org
The formation of the Isthmus of Panama stands as one of the greatest natural events of the
Cenozoic, driving profound biotic transformations on land and in the oceans. Some recent …

Evolutionary history, potential intermediate animal host, and cross‐species analyses of SARS‐CoV‐2

X Li, J Zai, Q Zhao, Q Nie, Y Li, BT Foley… - Journal of medical …, 2020 - Wiley Online Library
To investigate the evolutionary history of the recent outbreak of severe acute respiratory
syndrome coronavirus 2 (SARS‐CoV‐2) in China, a total of 70 genomes of virus strains from …

A species-level timeline of mammal evolution integrating phylogenomic data

S Álvarez-Carretero, AU Tamuri, M Battini… - Nature, 2022 - nature.com
High-throughput sequencing projects generate genome-scale sequence data for species-
level phylogenies,–. However, state-of-the-art Bayesian methods for inferring timetrees are …

[HTML][HTML] Natural selection in the evolution of SARS-CoV-2 in bats created a generalist virus and highly capable human pathogen

OA MacLean, S Lytras, S Weaver, JB Singer… - PLoS …, 2021 - journals.plos.org
Virus host shifts are generally associated with novel adaptations to exploit the cells of the
new host species optimally. Surprisingly, Severe Acute Respiratory Syndrome Coronavirus …

The first two cases of 2019‐nCoV in Italy: Where they come from?

M Giovanetti, D Benvenuto, S Angeletti… - Journal of medical …, 2020 - Wiley Online Library
Abstract A novel Coronavirus, 2019‐nCoV, has been identified as the causal pathogen of an
ongoing epidemic, with the first cases reported in Wuhan, China, last December 2019, and …

Introductions and early spread of SARS-CoV-2 in the New York City area

AS Gonzalez-Reiche, MM Hernandez, MJ Sullivan… - Science, 2020 - science.org
New York City (NYC) has emerged as one of the epicenters of the current severe acute
respiratory syndrome coronavirus 2 (SARS-CoV-2) pandemic. To identify the early …

[HTML][HTML] Triangulation supports agricultural spread of the Transeurasian languages

M Robbeets, R Bouckaert, M Conte, A Savelyev, T Li… - Nature, 2021 - nature.com
The origin and early dispersal of speakers of Transeurasian languages—that is, Japanese,
Korean, Tungusic, Mongolic and Turkic—is among the most disputed issues of Eurasian …

[HTML][HTML] Vulnerabilities in coronavirus glycan shields despite extensive glycosylation

Y Watanabe, ZT Berndsen, J Raghwani… - Nature …, 2020 - nature.com
Severe acute respiratory syndrome (SARS) and Middle East respiratory syndrome (MERS)
coronaviruses (CoVs) are zoonotic pathogens with high fatality rates and pandemic …

[HTML][HTML] BEAST 2.5: An advanced software platform for Bayesian evolutionary analysis

R Bouckaert, TG Vaughan… - PLoS computational …, 2019 - journals.plos.org
Elaboration of Bayesian phylogenetic inference methods has continued at pace in recent
years with major new advances in nearly all aspects of the joint modelling of evolutionary …