A global phylogeny of turtles reveals a burst of climate-associated diversification on continental margins

RC Thomson, PQ Spinks… - Proceedings of the …, 2021 - National Acad Sciences
Living turtles are characterized by extraordinarily low species diversity given their age. The
clade's extensive fossil record indicates that climate and biogeography may have played …

Interpreting the genomic landscape of speciation: a road map for finding barriers to gene flow

M Ravinet, R Faria, RK Butlin, J Galindo… - Journal of …, 2017 - academic.oup.com
Speciation, the evolution of reproductive isolation among populations, is continuous,
complex, and involves multiple, interacting barriers. Until it is complete, the effects of this …

The delayed and geographically heterogeneous diversification of flowering plant families

S Ramírez-Barahona, H Sauquet… - Nature Ecology & …, 2020 - nature.com
Abstract The Early Cretaceous (145–100 million years ago (Ma)) witnessed the rise of
flowering plants (angiosperms), which ultimately lead to profound changes in terrestrial plant …

RevBayes: Bayesian phylogenetic inference using graphical models and an interactive model-specification language

S Höhna, MJ Landis, TA Heath, B Boussau… - Systematic …, 2016 - academic.oup.com
Programs for Bayesian inference of phylogeny currently implement a unique and fixed suite
of models. Consequently, users of these software packages are simultaneously forced to …

Whole-genome analyses resolve early branches in the tree of life of modern birds

ED Jarvis, S Mirarab, AJ Aberer, B Li, P Houde, C Li… - Science, 2014 - science.org
To better determine the history of modern birds, we performed a genome-scale phylogenetic
analysis of 48 species representing all orders of Neoaves using phylogenomic methods …

The global spread of 2019-nCoV: a molecular evolutionary analysis

D Benvenuto, M Giovanetti, M Salemi… - Pathogens and global …, 2020 - Taylor & Francis
The global spread of the 2019-nCoV is continuing and is fast moving, as indicated by the
WHO raising the risk assessment to high. In this article, we provide a preliminary …

Ten millennia of hepatitis B virus evolution

A Kocher, L Papac, R Barquera, FM Key, MA Spyrou… - Science, 2021 - science.org
Hepatitis B virus (HBV) has been infecting humans for millennia and remains a global health
problem, but its past diversity and dispersal routes are largely unknown. We generated HBV …

bModelTest: Bayesian phylogenetic site model averaging and model comparison

RR Bouckaert, AJ Drummond - BMC evolutionary biology, 2017 - Springer
Abstract Background Reconstructing phylogenies through Bayesian methods has many
benefits, which include providing a mathematically sound framework, providing realistic …

Virus genomes reveal factors that spread and sustained the Ebola epidemic

G Dudas, LM Carvalho, T Bedford, AJ Tatem, G Baele… - Nature, 2017 - nature.com
Abstract The 2013–2016 West African epidemic caused by the Ebola virus was of
unprecedented magnitude, duration and impact. Here we reconstruct the dispersal …

A metacalibrated time‐tree documents the early rise of flowering plant phylogenetic diversity

S Magallón, S Gómez‐Acevedo… - New …, 2015 - Wiley Online Library
The establishment of modern terrestrial life is indissociable from angiosperm evolution.
While available molecular clock estimates of angiosperm age range from the Paleozoic to …