Recent progress in the synthesis of advanced biofuel and bioproducts
BF Pfleger, R Takors - Current Opinion in Biotechnology, 2023 - Elsevier
Highlights●Why biofuels and bioproducts remain critical to society●What molecular
products can be made by biotechnology using available feedstocks●How new systems and …
products can be made by biotechnology using available feedstocks●How new systems and …
Milligrams to kilograms: making microbes work at scale
WT Cordell, G Avolio, R Takors, BF Pfleger - Trends in Biotechnology, 2023 - cell.com
If biomanufacturing can become a sustainable route for producing chemicals, it will provide
a critical step in reducing greenhouse gas emissions to fight climate change. However …
a critical step in reducing greenhouse gas emissions to fight climate change. However …
Enzyme expression kinetics by Escherichia coli during transition from rich to minimal media depends on proteome reserves
Bacterial fitness depends on adaptability to changing environments. In rich growth medium,
which is replete with amino acids, Escherichia coli primarily expresses protein synthesis …
which is replete with amino acids, Escherichia coli primarily expresses protein synthesis …
Metabolomics and Microbial Metabolism: Toward a Systematic Understanding
D Holbrook-Smith, J Trouillon… - Annual Review of …, 2023 - annualreviews.org
Over the past decades, our understanding of microbial metabolism has increased
dramatically. Metabolomics, a family of techniques that are used to measure the quantities of …
dramatically. Metabolomics, a family of techniques that are used to measure the quantities of …
Genomic footprinting uncovers global transcription factor responses to amino acids in Escherichia coli
Our knowledge of transcriptional responses to changes in nutrient availability comes
primarily from few well-studied transcription factors (TFs), often lacking an unbiased genome …
primarily from few well-studied transcription factors (TFs), often lacking an unbiased genome …
Proteome partitioning constraints in long-term laboratory evolution
Adaptive laboratory evolution experiments provide a controlled context in which the
dynamics of selection and adaptation can be followed in real-time at the single-nucleotide …
dynamics of selection and adaptation can be followed in real-time at the single-nucleotide …
Functional Decomposition of Metabolism allows a system-level quantification of fluxes and protein allocation towards specific metabolic functions
Quantifying the contribution of individual molecular components to complex cellular
processes is a grand challenge in systems biology. Here we establish a general theoretical …
processes is a grand challenge in systems biology. Here we establish a general theoretical …
Shaping of microbial phenotypes by trade-offs
M Zhu, X Dai - Nature Communications, 2024 - nature.com
Growth rate maximization is an important fitness strategy for microbes. However, the wide
distribution of slow-growing oligotrophic microbes in ecosystems suggests that rapid growth …
distribution of slow-growing oligotrophic microbes in ecosystems suggests that rapid growth …
Understanding and computational design of genetic circuits of metabolic networks
A Berkvens, L Salinas, M Remeijer… - Essays in …, 2024 - portlandpress.com
The expression of metabolic proteins is controlled by genetic circuits, matching metabolic
demands and changing environmental conditions. Ideally, this regulation brings about a …
demands and changing environmental conditions. Ideally, this regulation brings about a …
Deep mutational scanning reveals the molecular determinants of RNA polymerase-mediated adaptation and tradeoffs
RNA polymerase (RNAP) is emblematic of complex biological systems that control multiple
traits involving trade-offs such as growth versus maintenance. Laboratory evolution has …
traits involving trade-offs such as growth versus maintenance. Laboratory evolution has …