Functions of bromodomain-containing proteins and their roles in homeostasis and cancer
T Fujisawa, P Filippakopoulos - Nature reviews Molecular cell biology, 2017 - nature.com
Bromodomains (BRDs) are evolutionarily conserved protein–protein interaction modules
that are found in a wide range of proteins with diverse catalytic and scaffolding functions and …
that are found in a wide range of proteins with diverse catalytic and scaffolding functions and …
Technological developments in lncRNA biology
S Jathar, V Kumar, J Srivastava, V Tripathi - Long Non Coding RNA …, 2017 - Springer
It is estimated that more than 90% of the mammalian genome is transcribed as non-coding
RNAs. Recent evidences have established that these non-coding transcripts are not junk or …
RNAs. Recent evidences have established that these non-coding transcripts are not junk or …
Accurate and efficient detection of gene fusions from RNA sequencing data
S Uhrig, J Ellermann, T Walther, P Burkhardt… - Genome …, 2021 - genome.cshlp.org
The identification of gene fusions from RNA sequencing data is a routine task in cancer
research and precision oncology. However, despite the availability of many computational …
research and precision oncology. However, despite the availability of many computational …
Accuracy assessment of fusion transcript detection via read-mapping and de novo fusion transcript assembly-based methods
Background Accurate fusion transcript detection is essential for comprehensive
characterization of cancer transcriptomes. Over the last decade, multiple bioinformatic tools …
characterization of cancer transcriptomes. Over the last decade, multiple bioinformatic tools …
PAX5-driven subtypes of B-progenitor acute lymphoblastic leukemia
Recent genomic studies have identified chromosomal rearrangements defining new
subtypes of B-progenitor acute lymphoblastic leukemia (B-ALL), however many cases lack a …
subtypes of B-progenitor acute lymphoblastic leukemia (B-ALL), however many cases lack a …
The genetic basis and cell of origin of mixed phenotype acute leukaemia
TB Alexander, Z Gu, I Iacobucci, K Dickerson, JK Choi… - Nature, 2018 - nature.com
Mixed phenotype acute leukaemia (MPAL) is a high-risk subtype of leukaemia with myeloid
and lymphoid features, limited genetic characterization, and a lack of consensus regarding …
and lymphoid features, limited genetic characterization, and a lack of consensus regarding …
Identification of factors required for m6A mRNA methylation in Arabidopsis reveals a role for the conserved E3 ubiquitin ligase HAKAI
K Růžička, M Zhang, A Campilho, Z Bodi… - New …, 2017 - Wiley Online Library
Summary N6‐adenosine methylation (m6A) of mRNA is an essential process in most
eukaryotes, but its role and the status of factors accompanying this modification are still …
eukaryotes, but its role and the status of factors accompanying this modification are still …
A comprehensive transcriptional portrait of human cancer cell lines
C Klijn, S Durinck, EW Stawiski, PM Haverty… - Nature …, 2015 - nature.com
Tumor-derived cell lines have served as vital models to advance our understanding of
oncogene function and therapeutic responses. Although substantial effort has been made to …
oncogene function and therapeutic responses. Although substantial effort has been made to …
Multi-omics characterization of the 4T1 murine mammary gland tumor model
Background: Tumor models are critical for our understanding of cancer and the development
of cancer therapeutics. The 4T1 murine mammary cancer cell line is one of the most widely …
of cancer therapeutics. The 4T1 murine mammary cancer cell line is one of the most widely …
The landscape and therapeutic relevance of cancer-associated transcript fusions
Transcript fusions as a result of chromosomal rearrangements have been a focus of
attention in cancer as they provide attractive therapeutic targets. To identify novel fusion …
attention in cancer as they provide attractive therapeutic targets. To identify novel fusion …