[HTML][HTML] Small extrachromosomal circular DNA harboring targeted tumor suppressor gene mutations supports intratumor heterogeneity in mouse liver cancer induced …

T Guo, GQ Chen, XF Li, M Wang, KM Liu, XY Yang… - Genome Medicine, 2023 - Springer
Background Primary liver cancer has significant intratumor genetic heterogeneity (IGH),
which drives cancer evolution and prevents effective cancer treatment. CRISPR/Cas9 …

[HTML][HTML] Measuring the distribution of fitness effects in somatic evolution by combining clonal dynamics with dN/dS ratios

MJ Williams, L Zapata, B Werner, CP Barnes… - Elife, 2020 - elifesciences.org
The distribution of fitness effects (DFE) defines how new mutations spread through an
evolving population. The ratio of non-synonymous to synonymous mutations (dN/dS) has …

Big bang tumor growth and clonal evolution

R Sun, Z Hu, C Curtis - Cold Spring …, 2018 - perspectivesinmedicine.cshlp.org
The advent and application of next-generation sequencing (NGS) technologies to tumor
genomes has reinvigorated efforts to understand clonal evolution. Although tumor …

[HTML][HTML] Therapy induced genome chaos: A novel mechanism of rapid cancer drug resistance

JC Ye, S Horne, JZ Zhang, L Jackson… - Frontiers in Cell and …, 2021 - frontiersin.org
Drug resistance represents an ultimate challenge for cancer treatment. The initial rationale
behind using chemo-treatment was the preferred elimination of fast-growing cancer cells …

Physical interactions reduce the power of natural selection in growing yeast colonies

A Giometto, DR Nelson… - Proceedings of the …, 2018 - National Acad Sciences
Microbial populations often assemble in dense populations in which proliferating individuals
exert mechanical forces on the nearby cells. Here, we use yeast strains whose doubling …

Cracking the pattern of tumor evolution based on single-cell copy number alterations

Y Wang, M Zhang, J Shi, Y Zhu, X Wang… - Briefings in …, 2023 - academic.oup.com
Copy number alterations (CNAs) are a key characteristic of tumor development and
progression. The accumulation of various CNAs during tumor development plays a critical …

[HTML][HTML] Evolving insights: how DNA repair pathways impact cancer evolution

J Zhou, XA Zhou, N Zhang, J Wang - Cancer Biology & Medicine, 2020 - ncbi.nlm.nih.gov
Viewing cancer as a large, evolving population of heterogeneous cells is a common
perspective. Because genomic instability is one of the fundamental features of cancer, this …

Spatial mutation patterns as markers of early colorectal tumor cell mobility

MD Ryser, BH Min, KD Siegmund… - Proceedings of the …, 2018 - National Acad Sciences
A growing body of evidence suggests that a subset of human cancers grows as single clonal
expansions. In such a nearly neutral evolution scenario, it is possible to infer the early …

CellCoal: coalescent simulation of single-cell sequencing samples

D Posada - Molecular biology and evolution, 2020 - academic.oup.com
Our capacity to study individual cells has enabled a new level of resolution for
understanding complex biological systems such as multicellular organisms or microbial …

[HTML][HTML] Personalization of medical treatments in oncology: time for rethinking the disease concept to improve individual outcomes

M Bizzarri, V Fedeli, N Monti, A Cucina, M Jalouli… - EPMA Journal, 2021 - Springer
The agenda of pharmacology discovery in the field of personalized oncology was dictated
by the search of molecular targets assumed to deterministically drive tumor development. In …