[HTML][HTML] Small extrachromosomal circular DNA harboring targeted tumor suppressor gene mutations supports intratumor heterogeneity in mouse liver cancer induced …
T Guo, GQ Chen, XF Li, M Wang, KM Liu, XY Yang… - Genome Medicine, 2023 - Springer
Background Primary liver cancer has significant intratumor genetic heterogeneity (IGH),
which drives cancer evolution and prevents effective cancer treatment. CRISPR/Cas9 …
which drives cancer evolution and prevents effective cancer treatment. CRISPR/Cas9 …
[HTML][HTML] Measuring the distribution of fitness effects in somatic evolution by combining clonal dynamics with dN/dS ratios
The distribution of fitness effects (DFE) defines how new mutations spread through an
evolving population. The ratio of non-synonymous to synonymous mutations (dN/dS) has …
evolving population. The ratio of non-synonymous to synonymous mutations (dN/dS) has …
Big bang tumor growth and clonal evolution
The advent and application of next-generation sequencing (NGS) technologies to tumor
genomes has reinvigorated efforts to understand clonal evolution. Although tumor …
genomes has reinvigorated efforts to understand clonal evolution. Although tumor …
[HTML][HTML] Therapy induced genome chaos: A novel mechanism of rapid cancer drug resistance
JC Ye, S Horne, JZ Zhang, L Jackson… - Frontiers in Cell and …, 2021 - frontiersin.org
Drug resistance represents an ultimate challenge for cancer treatment. The initial rationale
behind using chemo-treatment was the preferred elimination of fast-growing cancer cells …
behind using chemo-treatment was the preferred elimination of fast-growing cancer cells …
Physical interactions reduce the power of natural selection in growing yeast colonies
A Giometto, DR Nelson… - Proceedings of the …, 2018 - National Acad Sciences
Microbial populations often assemble in dense populations in which proliferating individuals
exert mechanical forces on the nearby cells. Here, we use yeast strains whose doubling …
exert mechanical forces on the nearby cells. Here, we use yeast strains whose doubling …
Cracking the pattern of tumor evolution based on single-cell copy number alterations
Y Wang, M Zhang, J Shi, Y Zhu, X Wang… - Briefings in …, 2023 - academic.oup.com
Copy number alterations (CNAs) are a key characteristic of tumor development and
progression. The accumulation of various CNAs during tumor development plays a critical …
progression. The accumulation of various CNAs during tumor development plays a critical …
[HTML][HTML] Evolving insights: how DNA repair pathways impact cancer evolution
Viewing cancer as a large, evolving population of heterogeneous cells is a common
perspective. Because genomic instability is one of the fundamental features of cancer, this …
perspective. Because genomic instability is one of the fundamental features of cancer, this …
Spatial mutation patterns as markers of early colorectal tumor cell mobility
A growing body of evidence suggests that a subset of human cancers grows as single clonal
expansions. In such a nearly neutral evolution scenario, it is possible to infer the early …
expansions. In such a nearly neutral evolution scenario, it is possible to infer the early …
CellCoal: coalescent simulation of single-cell sequencing samples
D Posada - Molecular biology and evolution, 2020 - academic.oup.com
Our capacity to study individual cells has enabled a new level of resolution for
understanding complex biological systems such as multicellular organisms or microbial …
understanding complex biological systems such as multicellular organisms or microbial …
[HTML][HTML] Personalization of medical treatments in oncology: time for rethinking the disease concept to improve individual outcomes
The agenda of pharmacology discovery in the field of personalized oncology was dictated
by the search of molecular targets assumed to deterministically drive tumor development. In …
by the search of molecular targets assumed to deterministically drive tumor development. In …