Orthogonal operation of constitutional dynamic networks consisting of DNA-tweezer machines

L Yue, S Wang, A Cecconello, JM Lehn, I Willner - ACS nano, 2017 - ACS Publications
Overexpression or down-regulation of cellular processes are often controlled by dynamic
chemical networks. Bioinspired by nature, we introduce constitutional dynamic networks …

[HTML][HTML] Supramolecular assembly by time-programmed acid autocatalysis

G Panzarasa, T Sai, AL Torzynski… - … Systems Design & …, 2020 - pubs.rsc.org
Autocatalytic pH clocks can be useful to control self-assembly in the time domain. Their
applications are, however, limited by the currently available toolbox. We describe here an …

Amplification of enantiomeric excess, mirror-image symmetry breaking and kinetic proofreading in Soai reaction models with different oligomeric orders

JC Micheau, C Coudret, JM Cruz… - Physical Chemistry …, 2012 - pubs.rsc.org
A comprehensive kinetic analysis of three prototypical autocatalytic cycle models based on
the absolute asymmetric Soai reaction is presented. The three models, which can give rise …

A bistable switch in dynamic thiodepsipeptide folding and template‐directed ligation

R Mukherjee, R Cohen‐Luria, N Wagner… - Angewandte Chemie …, 2015 - Wiley Online Library
Bistable reaction networks provide living cells with chemically controlled mechanisms for
long‐term memory storage. Such networks are also often switchable and can be flipped from …

Seeking the chemical roots of Darwinism: bridging between chemistry and biology

A Pross - Chemistry–A European Journal, 2009 - Wiley Online Library
Chemistry and biology are intimately connected sciences yet the chemistry–biology interface
remains problematic and central issues regarding the very essence of living systems remain …

Competition and cooperation in dynamic replication networks

Z Dadon, N Wagner, S Alasibi… - … A European Journal, 2015 - Wiley Online Library
The simultaneous replication of six coiled‐coil peptide mutants by reversible thiol–thioester
exchange reactions is described. Experimental analysis of the time dependent evolution of …

Chemical and light triggering of peptide networks under partial thermodynamic control

Z Dadon, M Samiappan, N Wagner… - Chemical …, 2012 - pubs.rsc.org
The kinetics of novel dynamic libraries that operate via reversible replication is described. In
these systems, selective product formation is governed by peptides autocatalytic efficiency …

Molecular networks in dynamic multilevel systems

AG Orrillo, AM Escalante… - … A European Journal, 2019 - Wiley Online Library
Dynamic multilevel systems can be assembled from molecular building blocks through two
or more reversible reactions that form covalent bonds. Molecular networks of dynamic …

From simplicity to complex systems with bioinspired pseudopeptides

I Alfonso - Chemical Communications, 2016 - pubs.rsc.org
Pseudopeptidic compounds are chemical species with attractive applications in many fields
of chemistry. The increasing complexity in pseudopeptidic molecules has allowed …

Building Logic into Peptide Networks: Bottom‐Up and Top‐Down

G Ashkenasy, Z Dadon, S Alesebi… - Israel Journal of …, 2011 - Wiley Online Library
In this review we discuss our recent efforts directed at understanding the dynamics of
catalytic networks, and their utility for performing Boolean logic operations. We start by …