Bioinformatical approaches to characterize intrinsically disordered/unstructured proteins
Intrinsically disordered/unstructured proteins exist without a stable three-dimensional (3D)
structure as highly flexible conformational ensembles. The available genome sequences …
structure as highly flexible conformational ensembles. The available genome sequences …
Practical lessons from protein structure prediction
K Ginalski, NV Grishin, A Godzik… - Nucleic acids …, 2005 - academic.oup.com
Despite recent efforts to develop automated protein structure determination protocols,
structural genomics projects are slow in generating fold assignments for complete …
structural genomics projects are slow in generating fold assignments for complete …
Can correct protein models be identified?
B Wallner, A Elofsson - Protein science, 2003 - Wiley Online Library
The ability to separate correct models of protein structures from less correct models is of the
greatest importance for protein structure prediction methods. Several studies have examined …
greatest importance for protein structure prediction methods. Several studies have examined …
Tools for comparative protein structure modeling and analysis
The following resources for comparative protein structure modeling and analysis are
described (http://salilab. org): MODELLER, a program for comparative modeling by …
described (http://salilab. org): MODELLER, a program for comparative modeling by …
3D-Jury: a simple approach to improve protein structure predictions
Motivation: Consensus structure prediction methods (meta-predictors) have higher accuracy
than individual structure prediction algorithms (their components). The goal for the …
than individual structure prediction algorithms (their components). The goal for the …
GeneSilico protein structure prediction meta-server
MA Kurowski, JM Bujnicki - Nucleic acids research, 2003 - academic.oup.com
Rigorous assessments of protein structure prediction have demonstrated that fold
recognition methods can identify remote similarities between proteins when standard …
recognition methods can identify remote similarities between proteins when standard …
modbase, a database of annotated comparative protein structure models and associated resources
U Pieper, N Eswar, BM Webb, D Eramian… - Nucleic acids …, 2009 - academic.oup.com
Abstract MODBASE (http://salilab. org/modbase) is a database of annotated comparative
protein structure models. The models are calculated by MODPIPE, an automated modeling …
protein structure models. The models are calculated by MODPIPE, an automated modeling …
The SWISS‐MODEL Repository of annotated three‐dimensional protein structure homology models
Abstract The SWISS‐MODEL Repository is a database of annotated three‐dimensional
comparative protein structure models generated by the fully automated homology‐modelling …
comparative protein structure models generated by the fully automated homology‐modelling …
Structure prediction and phylogenetic analysis of a functionally diverse family of proteins homologous to the MT-A70 subunit of the human mRNA: m6A …
JM Bujnicki, M Feder, M Radlinska… - Journal of molecular …, 2002 - Springer
MT-A70 is the S-adenosylmethionine-binding subunit of human mRNA: m6A methyl-
transferase (MTase), an enzyme that sequence-specifically methylates adenines in pre …
transferase (MTase), an enzyme that sequence-specifically methylates adenines in pre …
Pcons: A neural‐network–based consensus predictor that improves fold recognition
J Lundström, L Rychlewski, J Bujnicki… - Protein …, 2001 - Wiley Online Library
During recent years many protein fold recognition methods have been developed, based on
different algorithms and using various kinds of information. To examine the performance of …
different algorithms and using various kinds of information. To examine the performance of …