Therapy resistance: opportunities created by adaptive responses to targeted therapies in cancer

M Labrie, JS Brugge, GB Mills… - Nature reviews Cancer, 2022 - nature.com
Normal cells explore multiple states to survive stresses encountered during development
and self-renewal as well as environmental stresses such as starvation, DNA damage, toxins …

[HTML][HTML] Next-generation machine learning for biological networks

DM Camacho, KM Collins, RK Powers, JC Costello… - Cell, 2018 - cell.com
Machine learning, a collection of data-analytical techniques aimed at building predictive
models from multi-dimensional datasets, is becoming integral to modern biological research …

[HTML][HTML] Cancer gene mutation frequencies for the US population

G Mendiratta, E Ke, M Aziz, D Liarakos, M Tong… - Nature …, 2021 - nature.com
Mutations play a fundamental role in the development of cancer, and many create targetable
vulnerabilities. There are both public health and basic science benefits from the …

Cancer-associated fibroblast–derived miR-146a-5p generates a niche that promotes bladder cancer stemness and chemoresistance

J Zhuang, L Shen, M Li, J Sun, J Hao, J Li, Z Zhu, S Ge… - Cancer research, 2023 - AACR
Cancer stem-like cells (CSC) play pivotal roles in both chemoresistance and recurrence of
many cancer types, including urothelial bladder cancer (UBC). In addition to intrinsic …

Systems chronotherapeutics

A Ballesta, PF Innominato, R Dallmann, DA Rand… - Pharmacological …, 2017 - ASPET
Chronotherapeutics aim at treating illnesses according to the endogenous biologic rhythms,
which moderate xenobiotic metabolism and cellular drug response. The molecular clocks …

Resistance to neoadjuvant chemotherapy in triple-negative breast cancer mediated by a reversible drug-tolerant state

GV Echeverria, Z Ge, S Seth, X Zhang… - Science translational …, 2019 - science.org
Eradicating triple-negative breast cancer (TNBC) resistant to neoadjuvant chemotherapy
(NACT) is a critical unmet clinical need. In this study, patient-derived xenograft (PDX) …

A CRISPR/Cas9-Engineered ARID1A-Deficient Human Gastric Cancer Organoid Model Reveals Essential and Nonessential Modes of Oncogenic Transformation

YH Lo, KS Kolahi, Y Du, CY Chang, A Krokhotin, A Nair… - Cancer discovery, 2021 - AACR
Mutations in ARID1A rank among the most common molecular aberrations in human cancer.
However, oncogenic consequences of ARID1A mutation in human cells remain poorly …

Research domain criteria: strengths, weaknesses, and potential alternatives for future psychiatric research

CA Ross, RL Margolis - Complex Psychiatry, 2019 - karger.com
Abstract The Research Domain Criteria (RDoC) paradigm was launched 10 years ago as a
superior approach for investigation of mental illness. RDoC conceptualizes normal human …

[HTML][HTML] A modular master regulator landscape controls cancer transcriptional identity

EO Paull, A Aytes, SJ Jones, PS Subramaniam… - Cell, 2021 - cell.com
Despite considerable efforts, the mechanisms linking genomic alterations to the
transcriptional identity of cancer cells remain elusive. Integrative genomic analysis, using a …

A precision oncology approach to the pharmacological targeting of mechanistic dependencies in neuroendocrine tumors

MJ Alvarez, PS Subramaniam, LH Tang, A Grunn… - Nature …, 2018 - nature.com
We introduce and validate a new precision oncology framework for the systematic
prioritization of drugs targeting mechanistic tumor dependencies in individual patients …