Fundamentals and methods for T‐and B‐cell epitope prediction
JL Sanchez-Trincado… - Journal of …, 2017 - Wiley Online Library
Adaptive immunity is mediated by T‐and B‐cells, which are immune cells capable of
developing pathogen‐specific memory that confers immunological protection. Memory and …
developing pathogen‐specific memory that confers immunological protection. Memory and …
[HTML][HTML] Immunoinformatics and epitope prediction in the age of genomic medicine
L Backert, O Kohlbacher - Genome medicine, 2015 - Springer
Immunoinformatics involves the application of computational methods to immunological
problems. Prediction of B-and T-cell epitopes has long been the focus of immunoinformatics …
problems. Prediction of B-and T-cell epitopes has long been the focus of immunoinformatics …
NetMHCpan, a method for MHC class I binding prediction beyond humans
Binding of peptides to major histocompatibility complex (MHC) molecules is the single most
selective step in the recognition of pathogens by the cellular immune system. The human …
selective step in the recognition of pathogens by the cellular immune system. The human …
NetMHCcons: a consensus method for the major histocompatibility complex class I predictions
A key role in cell-mediated immunity is dedicated to the major histocompatibility complex
(MHC) molecules that bind peptides for presentation on the cell surface. Several in silico …
(MHC) molecules that bind peptides for presentation on the cell surface. Several in silico …
[HTML][HTML] Generating quantitative models describing the sequence specificity of biological processes with the stabilized matrix method
Background Many processes in molecular biology involve the recognition of short
sequences of nucleic-or amino acids, such as the binding of immunogenic peptides to major …
sequences of nucleic-or amino acids, such as the binding of immunogenic peptides to major …
The PickPocket method for predicting binding specificities for receptors based on receptor pocket similarities: application to MHC-peptide binding
Motivation: Receptor–ligand interactions play an important role in controlling many
biological systems. One prominent example is the binding of peptides to the major …
biological systems. One prominent example is the binding of peptides to the major …
Accurate approximation method for prediction of class I MHC affinities for peptides of length 8, 10 and 11 using prediction tools trained on 9mers
Several accurate prediction systems have been developed for prediction of class I major
histocompatibility complex (MHC): peptide binding. Most of these are trained on binding …
histocompatibility complex (MHC): peptide binding. Most of these are trained on binding …
An introduction to epitope prediction methods and software
X Yang, X Yu - Reviews in medical virology, 2009 - Wiley Online Library
In this paper, current prediction methods and algorithms for both T‐and B cell epitopes are
reviewed, and a comprehensive summary of epitope prediction software and databases …
reviewed, and a comprehensive summary of epitope prediction software and databases …
[HTML][HTML] A community resource benchmarking predictions of peptide binding to MHC-I molecules
Recognition of peptides bound to major histocompatibility complex (MHC) class I molecules
by T lymphocytes is an essential part of immune surveillance. Each MHC allele has a …
by T lymphocytes is an essential part of immune surveillance. Each MHC allele has a …
[HTML][HTML] Evaluation of MHC class I peptide binding prediction servers: applications for vaccine research
Background Protein antigens and their specific epitopes are formulation targets for epitope-
based vaccines. A number of prediction servers are available for identification of peptides …
based vaccines. A number of prediction servers are available for identification of peptides …