Zebrafish models of COVID-19
SD Tyrkalska, S Candel, A Pedoto… - FEMS microbiology …, 2023 - academic.oup.com
Although COVID-19 has only recently appeared, research studies have already developed
and implemented many animal models for deciphering the secrets of the disease and …
and implemented many animal models for deciphering the secrets of the disease and …
Jumping a moving train: SARS-CoV-2 evolution in real time
AM Moustafa, PJ Planet - Journal of the Pediatric Infectious …, 2021 - academic.oup.com
The field of molecular epidemiology responded to the SARS-CoV-2 pandemic with an
unrivaled amount of whole viral genome sequencing. By the time this sentence is published …
unrivaled amount of whole viral genome sequencing. By the time this sentence is published …
SARS-CoV-2 mutant spectra at different depth levels reveal an overwhelming abundance of low frequency mutations
B Martínez-González, ME Soria, L Vázquez-Sirvent… - Pathogens, 2022 - mdpi.com
Populations of RNA viruses are composed of complex and dynamic mixtures of variant
genomes that are termed mutant spectra or mutant clouds. This applies also to SARS-CoV …
genomes that are termed mutant spectra or mutant clouds. This applies also to SARS-CoV …
Highly Multiplexed Reverse-Transcription Loop-Mediated Isothermal Amplification and Nanopore Sequencing (LAMPore) for Wastewater-Based Surveillance
Wastewater-based surveillance (WBS) has gained attention as a strategy to monitor and
provide an early warning for disease outbreaks. Here, we applied an isothermal gene …
provide an early warning for disease outbreaks. Here, we applied an isothermal gene …
Genome sequence diversity of SARS-CoV-2 obtained from clinical samples in Uzbekistan
A Abdullaev, A Abdurakhimov, Z Mirakbarova… - Plos one, 2022 - journals.plos.org
Tracking temporal and spatial genomic changes and evolution of the severe acute
respiratory syndrome coronavirus 2 (SARS-CoV-2) are among the most urgent research …
respiratory syndrome coronavirus 2 (SARS-CoV-2) are among the most urgent research …
[HTML][HTML] SARS-CoV-2 in hospital air as revealed by comprehensive respiratory viral panel sequencing
Background Nosocomially acquired severe acute respiratory syndrome coronavirus type 2
(SARS-CoV-2) infection has become the most significant pandemic of our lifetime. Though …
(SARS-CoV-2) infection has become the most significant pandemic of our lifetime. Though …
Pan-conserved segment tags identify ultra-conserved sequences across assemblies in the human pangenome
The human pangenome, a new reference sequence, addresses many limitations of the
current GRCh38 reference. The first release is based on 94 high-quality haploid assemblies …
current GRCh38 reference. The first release is based on 94 high-quality haploid assemblies …
The Algerian chapter of SARS-CoV-2 pandemic: an evolutionary, genetic, and epidemiological prospect
To explore the SARS-CoV-2 pandemic in Algeria, a dataset comprising ninety-five genomes
originating from SARS-CoV-2 sampled from Algeria and other countries worldwide, from 24 …
originating from SARS-CoV-2 sampled from Algeria and other countries worldwide, from 24 …
Mapping data to deep understanding: Making the most of the deluge of SARS-CoV-2 genome sequences
BA Sokhansanj, GL Rosen - Msystems, 2022 - Am Soc Microbiol
Next-generation sequencing has been essential to the global response to the COVID-19
pandemic. As of January 2022, nearly 7 million severe acute respiratory syndrome …
pandemic. As of January 2022, nearly 7 million severe acute respiratory syndrome …
Machine learning-based approach KEVOLVE efficiently identifies SARS-CoV-2 variant-specific genomic signatures
Machine learning was shown to be effective at identifying distinctive genomic signatures
among viral sequences. These signatures are defined as pervasive motifs in the viral …
among viral sequences. These signatures are defined as pervasive motifs in the viral …