Intestinal permeability and drug absorption: predictive experimental, computational and in vivo approaches

D Dahlgren, H Lennernäs - Pharmaceutics, 2019 - mdpi.com
The main objective of this review is to discuss recent advancements in the overall
investigation and in vivo prediction of drug absorption. The intestinal permeability of an …

[HTML][HTML] Permeability across lipid membranes

W Shinoda - Biochimica et Biophysica Acta (BBA)-Biomembranes, 2016 - Elsevier
Molecular permeation through lipid membranes is a fundamental biological process that is
important for small neutral molecules and drug molecules. Precise characterization of free …

Predicting a Drug's Membrane Permeability: A Computational Model Validated With in Vitro Permeability Assay Data

BJ Bennion, NA Be, MW McNerney, V Lao… - The journal of …, 2017 - ACS Publications
Membrane permeability is a key property to consider during the drug design process, and
particularly vital when dealing with small molecules that have intracellular targets as their …

[PDF][PDF] A method to predict blood-brain barrier permeability of drug-like compounds using molecular dynamics simulations

TS Carpenter, DA Kirshner, EY Lau, SE Wong… - Biophysical journal, 2014 - cell.com
The blood-brain barrier (BBB) is formed by specialized tight junctions between endothelial
cells that line brain capillaries to create a highly selective barrier between the brain and the …

Simulation-based approaches for determining membrane permeability of small compounds

CT Lee, J Comer, C Herndon, N Leung… - Journal of chemical …, 2016 - ACS Publications
Predicting the rate of nonfacilitated permeation of solutes across lipid bilayers is important to
drug design, toxicology, and signaling. These rates can be estimated using molecular …

[HTML][HTML] Rational design of liposomal drug delivery systems, a review: Combined experimental and computational studies of lipid membranes, liposomes and their …

A Bunker, A Magarkar, T Viitala - Biochimica et Biophysica Acta (BBA) …, 2016 - Elsevier
Combined experimental and computational studies of lipid membranes and liposomes, with
the aim to attain mechanistic understanding, result in a synergy that makes possible the …

GAFFlipid: a General Amber Force Field for the accurate molecular dynamics simulation of phospholipid

CJ Dickson, L Rosso, RM Betz, RC Walker, IR Gould - Soft Matter, 2012 - pubs.rsc.org
Previous attempts to simulate phospholipid bilayers using the General Amber Force Field
(GAFF) yielded many bilayer characteristics in agreement with experiment, however when …

Physical properties of model biological lipid bilayers: insights from all-atom molecular dynamics simulations

G Shahane, W Ding, M Palaiokostas, M Orsi - Journal of molecular …, 2019 - Springer
The physical properties of lipid bilayers are sensitive to the specific type and composition of
the lipids that make up the many different types of cell membranes. Studying model bilayers …

From coarse grained to atomistic: a serial multiscale approach to membrane protein simulations

PJ Stansfeld, MSP Sansom - Journal of chemical theory and …, 2011 - ACS Publications
Coarse-grained molecular dynamics provides a means for simulating the assembly and the
interactions of membrane protein/lipid complexes at a reduced level of representation …

The ELBA force field for coarse-grain modeling of lipid membranes

M Orsi, JW Essex - PloS one, 2011 - journals.plos.org
A new coarse-grain model for molecular dynamics simulation of lipid membranes is
presented. Following a simple and conventional approach, lipid molecules are modeled by …