Consensus between genes and stones in the biogeographic and evolutionary history of Central America

TA Gutiérrez-García, E Vázquez-Domínguez - Quaternary Research, 2013 - cambridge.org
Results from genetic and geologic studies can be combined to elucidate some general
patterns of the biogeographic and evolutionary history of Central America (CA) and of its …

Phylogeny and biogeography of the Poecilia sphenops species complex (Actinopterygii, Poeciliidae) in Central America

F Alda, RG Reina, I Doadrio, E Bermingham - Molecular Phylogenetics and …, 2013 - Elsevier
We inferred the phylogenetic relationships among members of the Poecilia sphenops
species complex to resolve the colonization process and radiation of this group in Central …

Towards rectifying limitations on species delineation in dusky salamanders (Desmognathus: Plethodontidae): an ecoregion-drainage sampling grid reveals additional …

DA Beamer, T Lamb - Zootaxa, 2020 - par.nsf.gov
Dusky salamanders (Desmognathus) constitute a large, species-rich group within the family
Plethodontidae, and though their systematic relationships have been addressed extensively …

DNA-based approaches for evaluating historical demography in terrestrial vertebrates

AL Fahey, RE Ricklefs… - Biological Journal of the …, 2014 - academic.oup.com
Contemporary DNA sequences can provide information about the historical demography of
a species. However, different molecular markers are informative under different …

Phycas: software for Bayesian phylogenetic analysis

PO Lewis, MT Holder, DL Swofford - Systematic Biology, 2015 - academic.oup.com
Phycas is open source, freely available Bayesian phylogenetics software written primarily in
C++ but with a Python interface. Phycas specializes in Bayesian model selection for …

Range‐wide phylogeography of the four‐toed salamander: out of Appalachia and into the glacial aftermath

TA Herman, JL Bouzat - Journal of Biogeography, 2016 - Wiley Online Library
Aim We assessed the phylogeography of Hemidactylium scutatum across the entire range of
the species, quantifying the diversity of populations, and identifying extrinsic factors that may …

From the mountains to the coast and back again: Ancient biogeography in a radiation of short-range endemic harvestmen from California

KN Emata, M Hedin - Molecular phylogenetics and evolution, 2016 - Elsevier
The harvestmen genus Calicina is represented by 25 short-range endemic species
occurring in the western Sierra Nevada, Transverse and Coast Ranges of California. Our …

The effects of inference method, population sampling, and gene sampling on species tree inferences: an empirical study in slender salamanders (Plethodontidae …

EL Jockusch, I Martínez-Solano, EK Timpe - Systematic biology, 2015 - academic.oup.com
Species tree methods are now widely used to infer the relationships among species from
multilocus data sets. Many methods have been developed, which differ in whether gene and …

Molecular evidence for cryptic candidate species in Iberian Pelodytes (Anura, Pelodytidae)

J Díaz-Rodríguez, H Gonçalves, F Sequeira… - Molecular Phylogenetics …, 2015 - Elsevier
Species delineation is a central topic in evolutionary biology, with current efforts focused on
developing efficient analytical tools to extract the most information from molecular data and …

Slender salamanders (genus Batrachoseps) reveal Southern California to be a center for the diversification, persistence, and introduction of salamander lineages

EL Jockusch, RW Hansen, RN Fisher, DB Wake - PeerJ, 2020 - peerj.com
Background The southern California biodiversity hotspot has had a complex geological
history, with both plate tectonic forces and sea level changes repeatedly reconfiguring the …