Chromosome organization in bacteria: mechanistic insights into genome structure and function

RT Dame, FZM Rashid, DC Grainger - Nature Reviews Genetics, 2020 - nature.com
Bacterial chromosomes are folded to compact DNA and facilitate cellular processes.
Studying model bacteria has revealed aspects of chromosome folding that are applicable to …

Structure and function of bacterial H-NS protein

DC Grainger - Biochemical society transactions, 2016 - portlandpress.com
The histone-like nucleoid structuring (H-NS) protein is a major component of the folded
chromosome in Escherichia coli and related bacteria. Functions attributed to H-NS include …

Widespread suppression of intragenic transcription initiation by H-NS

SS Singh, N Singh, RP Bonocora… - Genes & …, 2014 - genesdev.cshlp.org
Widespread intragenic transcription initiation has been observed in many species. Here we
show that the Escherichia coli ehxCABD operon contains numerous intragenic promoters in …

The multiple antibiotic resistance operon of enteric bacteria controls DNA repair and outer membrane integrity

P Sharma, JRJ Haycocks, AD Middlemiss… - Nature …, 2017 - nature.com
The multiple antibiotic resistance (mar) operon of Escherichia coli is a paradigm for
chromosomally encoded antibiotic resistance in enteric bacteria. The locus is recognised for …

Transcription of bacterial chromatin

BA Shen, R Landick - Journal of molecular biology, 2019 - Elsevier
Decades of research have probed the interplay between chromatin (genomic DNA
associated with proteins and RNAs) and transcription by RNA polymerase (RNAP) in all …

Three‐dimensional chromosome re‐modelling: the integral mechanism of transcription regulation in bacteria

FZM Rashid, RT Dame - Molecular Microbiology, 2023 - Wiley Online Library
Nucleoid‐associated proteins (NAPs) are architectural proteins of the bacterial chromosome
and transcription factors that dynamically organise the chromosome and regulate gene …

Horizontally acquired AT-rich genes in Escherichia coli cause toxicity by sequestering RNA polymerase

LE Lamberte, G Baniulyte, SS Singh, AM Stringer… - Nature …, 2017 - nature.com
Horizontal gene transfer permits rapid dissemination of genetic elements between
individuals in bacterial populations. Transmitted DNA sequences may encode favourable …

Excisionase in Pf filamentous prophage controls lysis‐lysogeny decision‐making in Pseudomonas aeruginosa

Y Li, X Liu, K Tang, P Wang, Z Zeng… - Molecular …, 2019 - Wiley Online Library
Pf filamentous prophages are prevalent among clinical and environmental Pseudomonas
aeruginosa isolates. Pf4 and Pf5 prophages are integrated into the host genomes of PAO1 …

H-NS and RNA polymerase: a love–hate relationship?

R Landick, JT Wade, DC Grainger - Current opinion in microbiology, 2015 - Elsevier
Highlights•Similarities in the DNA binding properties of H-NS and RNA polymerase.•
Interactions between H-NS and RNA polymerase throughout the transcription cycle.•H-NS …

The nucleoid protein Dps binds genomic DNA of Escherichia coli in a non-random manner

SS Antipov, MN Tutukina, EV Preobrazhenskaya… - PloS one, 2017 - journals.plos.org
Dps is a multifunctional homododecameric protein that oxidizes Fe2+ ions accumulating
them in the form of Fe2O3 within its protein cavity, interacts with DNA tightly condensing …