[PDF][PDF] The Allen mouse brain common coordinate framework: a 3D reference atlas

Q Wang, SL Ding, Y Li, J Royall, D Feng, P Lesnar… - Cell, 2020 - cell.com
Recent large-scale collaborations are generating major surveys of cell types and
connections in the mouse brain, collecting large amounts of data across modalities, spatial …

Merged magnetic resonance and light sheet microscopy of the whole mouse brain

GA Johnson, Y Tian, DG Ashbrook… - Proceedings of the …, 2023 - National Acad Sciences
We have developed workflows to align 3D magnetic resonance histology (MRH) of the
mouse brain with light sheet microscopy (LSM) and 3D delineations of the same specimen …

Innovative MRI techniques in neuroimaging approaches for cerebrovascular diseases and vascular cognitive impairment

L Carnevale, G Lembo - International Journal of Molecular Sciences, 2019 - mdpi.com
Cognitive impairment and dementia are recognized as major threats to public health. Many
studies have shown the important role played by challenges to the cerebral vasculature and …

Gene-environmental regulation of the postnatal post-mitotic neuronal maturation

GS Prince, M Reynolds, V Martina, HS Sun - Trends in Genetics, 2024 - cell.com
Embryonic neurodevelopment, particularly neural progenitor differentiation into post-mitotic
neurons, has been extensively studied. While the number and composition of post-mitotic …

[HTML][HTML] Variability and heritability of mouse brain structure: Microscopic MRI atlases and connectomes for diverse strains

N Wang, RJ Anderson, DG Ashbrook… - Neuroimage, 2020 - Elsevier
Genome-wide association studies have demonstrated significant links between human brain
structure and common DNA variants. Similar studies with rodents have been challenging …

[HTML][HTML] Cytoarchitecture of the mouse brain by high resolution diffusion magnetic resonance imaging

N Wang, LE White, Y Qi, G Cofer, GA Johnson - Neuroimage, 2020 - Elsevier
MRI has been widely used to probe the neuroanatomy of the mouse brain, directly
correlating MRI findings to histology is still challenging due to the limited spatial resolution …

[HTML][HTML] Resolution and b value dependent structural connectome in ex vivo mouse brain

S Crater, S Maharjan, Y Qi, Q Zhao, G Cofer, JC Cook… - Neuroimage, 2022 - Elsevier
Diffusion magnetic resonance imaging has been widely used in both clinical and preclinical
studies to characterize tissue microstructure and structural connectivity. The diffusion MRI …

Homophilic wiring principles underpin neuronal network topology in vitro

D Akarca, AWE Dunn, PJ Hornauer, S Ronchi… - BioRxiv, 2022 - biorxiv.org
Economic efficiency has been a popular explanation for how networks self-organize within
the developing nervous system. However, the precise nature of the economic negotiations …

[HTML][HTML] A technology platform for standardized cryoprotection and freezing of large-volume brain tissues for high-resolution histology

R Kumarasami, R Verma, K Pandurangan… - Frontiers in …, 2023 - ncbi.nlm.nih.gov
Understanding and mapping the human connectome is a long-standing endeavor of
neuroscience, yet the significant challenges associated with the large size of the human …

[HTML][HTML] A rapid workflow for neuron counting in combined light sheet microscopy and magnetic resonance histology

Y Tian, GA Johnson, RW Williams… - Frontiers in Neuroscience, 2023 - frontiersin.org
Information on regional variation in cell numbers and densities in the CNS provides critical
insight into structure, function, and the progression of CNS diseases. However, variability …