[HTML][HTML] A rapid workflow for neuron counting in combined light sheet microscopy and magnetic resonance histology
Information on regional variation in cell numbers and densities in the CNS provides critical
insight into structure, function, and the progression of CNS diseases. However, variability …
insight into structure, function, and the progression of CNS diseases. However, variability …
[HTML][HTML] Evaluation of kernel low-rank compressed sensing in preclinical diffusion magnetic resonance imaging
DAR De Souza, H Mathieu, JC Deloulme… - Frontiers in …, 2023 - frontiersin.org
Compressed sensing (CS) is widely used to accelerate clinical diffusion MRI acquisitions,
but it is not widely used in preclinical settings yet. In this study, we optimized and compared …
but it is not widely used in preclinical settings yet. In this study, we optimized and compared …
[HTML][HTML] A multicontrast MR atlas of the Wistar rat brain
GA Johnson, R Laoprasert, RJ Anderson, G Cofer… - NeuroImage, 2021 - Elsevier
Abstract We describe a multi-contrast, multi-dimensional atlas of the Wistar rat acquired at
microscopic spatial resolution using magnetic resonance histology (MRH). Diffusion …
microscopic spatial resolution using magnetic resonance histology (MRH). Diffusion …
Ex vivo MR histology and cytometric feature mapping connect three-dimensional in vivo MR images to two-dimensional histopathologic images of murine sarcomas
SJ Blocker, J Cook, YM Mowery, JI Everitt… - Radiology: Imaging …, 2021 - pubs.rsna.org
Purpose To establish a platform for quantitative tissue-based interpretation of
cytoarchitecture features from tumor MRI measurements. Materials and Methods In a pilot …
cytoarchitecture features from tumor MRI measurements. Materials and Methods In a pilot …
Prenatal heroin exposure alters brain morphology and connectivity in adolescent mice
KJ Hornburg, LM Slosky, G Cofer, J Cook… - NMR in …, 2023 - Wiley Online Library
The United States is experiencing a dramatic increase in maternal opioid misuse and,
consequently, the number of individuals exposed to opioids in utero. Prenatal opioid …
consequently, the number of individuals exposed to opioids in utero. Prenatal opioid …
HiDiver: a suite of methods to merge magnetic resonance histology, light sheet microscopy, and complete brain delineations
We have developed new imaging and computational workflows to produce accurately
aligned multimodal 3D images of the mouse brain that exploit high resolution magnetic …
aligned multimodal 3D images of the mouse brain that exploit high resolution magnetic …
[HTML][HTML] Diffusion MRI connections in the octopus brain
RE Jacobs - Experimental Neurobiology, 2022 - ncbi.nlm.nih.gov
Using high angle resolution diffusion magnetic resonance imaging (HARDI) with fiber
tractography analysis we map out a meso-scale connectome of the Octopus bimaculoides …
tractography analysis we map out a meso-scale connectome of the Octopus bimaculoides …
Ultrahigh field magnetic resonance imaging: new frontiers and possibilities in human imaging
MA Zubkov, AE Andreychenko, EI Kretov… - Physics …, 2019 - iopscience.iop.org
Increasing the strength of the static magnetic field is the main trend in modern magnetic
resonance imaging (MRI) of humans. Performing MRI in ultrahigh fields (7 T or more) …
resonance imaging (MRI) of humans. Performing MRI in ultrahigh fields (7 T or more) …
[HTML][HTML] Volumetric analysis of the aging auditory pathway using high resolution magnetic resonance histology
Numerous shown consequences of age-related hearing loss have been unveiled; however,
the relationship of the cortical and subcortical structures of the auditory pathway with aging …
the relationship of the cortical and subcortical structures of the auditory pathway with aging …
A time‐course study of actively stained mouse brains: Diffusion tensor imaging parameters and connectomic stability over 1 year
J Xiao, KJ Hornburg, G Cofer, JJ Cook… - NMR in …, 2022 - Wiley Online Library
While the application of diffusion tensor imaging (DTI), tractography, and connectomics to
fixed tissue is a common practice today, there have been limited studies examining the …
fixed tissue is a common practice today, there have been limited studies examining the …