[HTML][HTML] A rapid workflow for neuron counting in combined light sheet microscopy and magnetic resonance histology

Y Tian, GA Johnson, RW Williams… - Frontiers in Neuroscience, 2023 - frontiersin.org
Information on regional variation in cell numbers and densities in the CNS provides critical
insight into structure, function, and the progression of CNS diseases. However, variability …

[HTML][HTML] Evaluation of kernel low-rank compressed sensing in preclinical diffusion magnetic resonance imaging

DAR De Souza, H Mathieu, JC Deloulme… - Frontiers in …, 2023 - frontiersin.org
Compressed sensing (CS) is widely used to accelerate clinical diffusion MRI acquisitions,
but it is not widely used in preclinical settings yet. In this study, we optimized and compared …

[HTML][HTML] A multicontrast MR atlas of the Wistar rat brain

GA Johnson, R Laoprasert, RJ Anderson, G Cofer… - NeuroImage, 2021 - Elsevier
Abstract We describe a multi-contrast, multi-dimensional atlas of the Wistar rat acquired at
microscopic spatial resolution using magnetic resonance histology (MRH). Diffusion …

Ex vivo MR histology and cytometric feature mapping connect three-dimensional in vivo MR images to two-dimensional histopathologic images of murine sarcomas

SJ Blocker, J Cook, YM Mowery, JI Everitt… - Radiology: Imaging …, 2021 - pubs.rsna.org
Purpose To establish a platform for quantitative tissue-based interpretation of
cytoarchitecture features from tumor MRI measurements. Materials and Methods In a pilot …

Prenatal heroin exposure alters brain morphology and connectivity in adolescent mice

KJ Hornburg, LM Slosky, G Cofer, J Cook… - NMR in …, 2023 - Wiley Online Library
The United States is experiencing a dramatic increase in maternal opioid misuse and,
consequently, the number of individuals exposed to opioids in utero. Prenatal opioid …

HiDiver: a suite of methods to merge magnetic resonance histology, light sheet microscopy, and complete brain delineations

GA Johnson, Y Tian, GP Cofer, JC Cook, JC Gee… - BioRxiv, 2022 - biorxiv.org
We have developed new imaging and computational workflows to produce accurately
aligned multimodal 3D images of the mouse brain that exploit high resolution magnetic …

[HTML][HTML] Diffusion MRI connections in the octopus brain

RE Jacobs - Experimental Neurobiology, 2022 - ncbi.nlm.nih.gov
Using high angle resolution diffusion magnetic resonance imaging (HARDI) with fiber
tractography analysis we map out a meso-scale connectome of the Octopus bimaculoides …

Ultrahigh field magnetic resonance imaging: new frontiers and possibilities in human imaging

MA Zubkov, AE Andreychenko, EI Kretov… - Physics …, 2019 - iopscience.iop.org
Increasing the strength of the static magnetic field is the main trend in modern magnetic
resonance imaging (MRI) of humans. Performing MRI in ultrahigh fields (7 T or more) …

[HTML][HTML] Volumetric analysis of the aging auditory pathway using high resolution magnetic resonance histology

EY Du, BK Ortega, Y Ninoyu, RW Williams… - Frontiers in Aging …, 2022 - frontiersin.org
Numerous shown consequences of age-related hearing loss have been unveiled; however,
the relationship of the cortical and subcortical structures of the auditory pathway with aging …

A time‐course study of actively stained mouse brains: Diffusion tensor imaging parameters and connectomic stability over 1 year

J Xiao, KJ Hornburg, G Cofer, JJ Cook… - NMR in …, 2022 - Wiley Online Library
While the application of diffusion tensor imaging (DTI), tractography, and connectomics to
fixed tissue is a common practice today, there have been limited studies examining the …