[HTML][HTML] The technological landscape and applications of single-cell multi-omics
Single-cell multi-omics technologies and methods characterize cell states and activities by
simultaneously integrating various single-modality omics methods that profile the …
simultaneously integrating various single-modality omics methods that profile the …
[HTML][HTML] What is a cell type and how to define it?
H Zeng - Cell, 2022 - cell.com
Cell types are the basic functional units of an organism. Cell types exhibit diverse
phenotypic properties at multiple levels, making them challenging to define, categorize, and …
phenotypic properties at multiple levels, making them challenging to define, categorize, and …
[HTML][HTML] A high-resolution transcriptomic and spatial atlas of cell types in the whole mouse brain
The mammalian brain consists of millions to billions of cells that are organized into many cell
types with specific spatial distribution patterns and structural and functional properties …
types with specific spatial distribution patterns and structural and functional properties …
[HTML][HTML] Spatial proteogenomics reveals distinct and evolutionarily conserved hepatic macrophage niches
M Guilliams, J Bonnardel, B Haest, B Vanderborght… - Cell, 2022 - cell.com
The liver is the largest solid organ in the body, yet it remains incompletely characterized.
Here we present a spatial proteogenomic atlas of the healthy and obese human and murine …
Here we present a spatial proteogenomic atlas of the healthy and obese human and murine …
Single-cell atlases: shared and tissue-specific cell types across human organs
R Elmentaite, C Domínguez Conde, L Yang… - Nature Reviews …, 2022 - nature.com
The development of single-cell and spatial transcriptomics methods was instrumental in the
conception of the Human Cell Atlas initiative, which aims to generate an integrated map of …
conception of the Human Cell Atlas initiative, which aims to generate an integrated map of …
[HTML][HTML] Precise identification of cell states altered in disease using healthy single-cell references
Joint analysis of single-cell genomics data from diseased tissues and a healthy reference
can reveal altered cell states. We investigate whether integrated collections of data from …
can reveal altered cell states. We investigate whether integrated collections of data from …
[HTML][HTML] Automatic cell-type harmonization and integration across Human Cell Atlas datasets
Harmonizing cell types across the single-cell community and assembling them into a
common framework is central to building a standardized Human Cell Atlas. Here, we present …
common framework is central to building a standardized Human Cell Atlas. Here, we present …
CancerSCEM: a database of single-cell expression map across various human cancers
J Zeng, Y Zhang, Y Shang, J Mai, S Shi… - Nucleic acids …, 2022 - academic.oup.com
With the proliferating studies of human cancers by single-cell RNA sequencing technique
(scRNA-seq), cellular heterogeneity, immune landscape and pathogenesis within diverse …
(scRNA-seq), cellular heterogeneity, immune landscape and pathogenesis within diverse …
Single-cell analysis of shared signatures and transcriptional diversity during zebrafish development
A Sur, Y Wang, P Capar, G Margolin, MK Prochaska… - Developmental Cell, 2023 - cell.com
During development, animals generate distinct cell populations with specific identities,
functions, and morphologies. We mapped transcriptionally distinct populations across …
functions, and morphologies. We mapped transcriptionally distinct populations across …
[HTML][HTML] A decade of molecular cell atlases
SR Quake - Trends in genetics, 2022 - cell.com
In recent years there has been tremendous progress towards deep molecular
characterization of cell types using single-cell transcriptome sequencing, creating so-called …
characterization of cell types using single-cell transcriptome sequencing, creating so-called …