Electron-correlated fragment-molecular-orbital calculations for biomolecular and nano systems

S Tanaka, Y Mochizuki, Y Komeiji, Y Okiyama… - Physical Chemistry …, 2014 - pubs.rsc.org
Recent developments in the fragment molecular orbital (FMO) method for theoretical
formulation, implementation, and application to nano and biomolecular systems are …

Alternative pre-mRNA splicing and proteome expansion in metazoans

T Maniatis, B Tasic - Nature, 2002 - nature.com
The protein coding sequences of most eukaryotic messenger RNA precursors (pre-mRNAs)
are interrupted by non-coding sequences called introns. Pre-mRNA splicing is the process …

[HTML][HTML] Non-coding RNAs: the architects of eukaryotic complexity

JS Mattick - EMBO reports, 2001 - embopress.org
Around 98% of all transcriptional output in humans is non-coding RNA. RNA-mediated gene
regulation is widespread in higher eukaryotes and complex genetic phenomena like RNA …

Influence of RNA secondary structure on the pre-mRNA splicing process

E Buratti, FE Baralle - Molecular and cellular biology, 2004 - Taylor & Francis
Pre-mRNA splicing in eukaryotes requires joining together the nucleotides of the various
mRNA-coding regions (exons) after recognizing them from the normally vastly superior …

Prp8 protein: at the heart of the spliceosome

RJ Grainger, JD Beggs - Rna, 2005 - rnajournal.cshlp.org
Pre-messenger RNA (pre-mRNA) splicing is a central step in gene expression. Lying
between transcription and protein synthesis, pre-mRNA splicing removes sequences …

Human Sin3 deacetylase and trithorax-related Set1/Ash2 histone H3-K4 methyltransferase are tethered together selectively by the cell-proliferation factor HCF-1

J Wysocka, MP Myers, CD Laherty… - Genes & …, 2003 - genesdev.cshlp.org
The abundant and chromatin-associated protein HCF-1 is a critical player in mammalian cell
proliferation as well as herpes simplex virus (HSV) transcription. We show here that …

[HTML][HTML] Pseudouridine synthases

T Hamma, AR Ferré-D'Amaré - Chemistry & biology, 2006 - cell.com
Pseudouridine synthases are the enzymes responsible for the most abundant
posttranscriptional modification of cellular RNAs. These enzymes catalyze the site-specific …

The double-stranded-RNA-binding motif: interference and much more

B Tian, PC Bevilacqua, A Diegelman-Parente… - … reviews Molecular cell …, 2004 - nature.com
RNA duplexes have been catapulted into the spotlight by the discovery of RNA interference
and related phenomena. But double-stranded and highly structured RNAs have long been …

[HTML][HTML] Anionic micelles and vesicles induce tau fibrillization in vitro

CN Chirita, M Necula, J Kuret - Journal of Biological Chemistry, 2003 - ASBMB
Alzheimer's disease is defined in part by the intraneuronal accumulation of filaments
comprised of the microtubule-associated protein tau. In vitro, fibrillization of recombinant tau …

Muscleblind-like 1 interacts with RNA hairpins in splicing target and pathogenic RNAs

Y Yuan, SA Compton, K Sobczak… - Nucleic acids …, 2007 - academic.oup.com
The MBNL and CELF proteins act antagonistically to control the alternative splicing of
specific exons during mammalian postnatal development. This process is dysregulated in …