PlantRegMap: charting functional regulatory maps in plants
With the goal of charting plant transcriptional regulatory maps (ie transcription factors (TFs),
cis-elements and interactions between them), we have upgraded the TF-centred database …
cis-elements and interactions between them), we have upgraded the TF-centred database …
PlantTFDB 4.0: toward a central hub for transcription factors and regulatory interactions in plants
With the goal of providing a comprehensive, high-quality resource for both plant transcription
factors (TFs) and their regulatory interactions with target genes, we upgraded plant TF …
factors (TFs) and their regulatory interactions with target genes, we upgraded plant TF …
Identification and evolution of gene regulatory networks: insights from comparative studies in plants
DM Jones, K Vandepoele - Current opinion in plant biology, 2020 - Elsevier
Highlights•Target genes of orthologous transcription factors can vary greatly.•Duplicated
transcription factor genes frequently have divergent expression patterns.•Comparing gene …
transcription factor genes frequently have divergent expression patterns.•Comparing gene …
Network‐based approaches for understanding gene regulation and function in plants
DK Ko, F Brandizzi - The Plant Journal, 2020 - Wiley Online Library
Expression reprogramming directed by transcription factors is a primary gene regulation
underlying most aspects of the biology of any organism. Our views of how gene regulation is …
underlying most aspects of the biology of any organism. Our views of how gene regulation is …
[HTML][HTML] Chromosome-level genome assembly of a parent species of widely cultivated azaleas
Azaleas (Ericaceae) comprise one of the most diverse ornamental plants, renowned for their
cultural and economic importance. We present a chromosome-scale genome assembly for …
cultural and economic importance. We present a chromosome-scale genome assembly for …
RAV transcription factors are essential for disease resistance against cassava bacterial blight via activation of melatonin biosynthesis genes
Y Wei, Y Chang, H Zeng, G Liu, C He… - Journal of pineal …, 2018 - Wiley Online Library
With 1 AP 2 domain and 1 B3 domain, 7 Me RAV s in apetala2/ethylene response factor (AP
2/ERF) gene family have been identified in cassava. However, the in vivo roles of these …
2/ERF) gene family have been identified in cassava. However, the in vivo roles of these …
Multi‐omics network‐based functional annotation of unknown Arabidopsis genes
T Depuydt, K Vandepoele - The Plant Journal, 2021 - Wiley Online Library
Unraveling gene function is pivotal to understanding the signaling cascades that control
plant development and stress responses. As experimental profiling is costly and labor …
plant development and stress responses. As experimental profiling is costly and labor …
[HTML][HTML] A wheat integrative regulatory network from large-scale complementary functional datasets enables trait-associated gene discovery for crop improvement
Gene regulation is central to all aspects of organism growth, and understanding it using
large-scale functional datasets can provide a whole view of biological processes controlling …
large-scale functional datasets can provide a whole view of biological processes controlling …
Integrative inference of transcriptional networks in Arabidopsis yields novel ROS signalling regulators
Gene regulation is a dynamic process in which transcription factors (TFs) play an important
role in controlling spatiotemporal gene expression. To enhance our global understanding of …
role in controlling spatiotemporal gene expression. To enhance our global understanding of …
Gapless genome assembly of azalea and multi-omics investigation into divergence between two species with distinct flower color
Abstract The genus Rhododendron (Ericaceae), with more than 1000 species highly diverse
in flower color, is providing distinct ornamental values and a model system for flower color …
in flower color, is providing distinct ornamental values and a model system for flower color …