Optimizing ancestral trait reconstruction of large HIV Subtype C datasets through multiple-trait subsampling

X Li, NS Trovão, JO Wertheim, G Baele… - Virus …, 2023 - academic.oup.com
Large datasets along with sampling bias represent a challenge for phylodynamic
reconstructions, particularly when the study data are obtained from various heterogeneous …

INSaFLU-TELEVIR: an open web-based bioinformatics suite for viral metagenomic detection and routine genomic surveillance

JD Santos, D Sobral, M Pinheiro, J Isidro, C Bogaardt… - Genome Medicine, 2024 - Springer
Background Implementation of clinical metagenomics and pathogen genomic surveillance
can be particularly challenging due to the lack of bioinformatics tools and/or expertise. In …