Featurization strategies for protein–ligand interactions and their applications in scoring function development

G Xiong, C Shen, Z Yang, D Jiang, S Liu… - Wiley …, 2022 - Wiley Online Library
The predictive performance of classical scoring functions (SFs) seems to have reached a
plateau. Currently, SFs relying on sophisticated machine learning techniques have shown …

Computer-aided drug discovery and design: recent advances and future prospects

A Talevi - Computational Drug Discovery and Design, 2023 - Springer
Computer-aided drug discovery and design involve the use of information technologies to
identify and develop, on a rational ground, chemical compounds that align a set of desired …

TB-IECS: an accurate machine learning-based scoring function for virtual screening

X Zhang, C Shen, D Jiang, J Zhang, Q Ye, L Xu… - Journal of …, 2023 - Springer
Abstract Machine learning-based scoring functions (MLSFs) have shown potential for
improving virtual screening capabilities over classical scoring functions (SFs). Due to the …

The impact of cross-docked poses on performance of machine learning classifier for protein–ligand binding pose prediction

C Shen, X Hu, J Gao, X Zhang, H Zhong… - Journal of …, 2021 - Springer
Abstract Structure-based drug design depends on the detailed knowledge of the three-
dimensional (3D) structures of protein–ligand binding complexes, but accurate prediction of …

Determination of molecule category of ligands targeting the ligand-binding pocket of nuclear receptors with structural elucidation and machine learning

Q Wang, Z Wang, S Tian, L Wang, R Tang… - Journal of Chemical …, 2022 - ACS Publications
The mechanism of transcriptional activation/repression of the nuclear receptors (NRs)
involves two main conformations of the NR protein, namely, the active (agonistic) and …

XLPFE: A simple and effective machine learning scoring function for protein–ligand scoring and ranking

L Dong, X Qu, B Wang - ACS omega, 2022 - ACS Publications
Prediction of protein–ligand binding affinities is a central issue in structure-based computer-
aided drug design. In recent years, much effort has been devoted to the prediction of the …

[HTML][HTML] Resources and computational strategies to advance small molecule SARS-CoV-2 discovery: Lessons from the pandemic and preparing for future health …

N Singh, BO Villoutreix - Computational and Structural Biotechnology …, 2021 - Elsevier
There is an urgent need to identify new therapies that prevent SARS-CoV-2 infection and
improve the outcome of COVID-19 patients. This pandemic has thus spurred intensive …

ML-PLIC: a web platform for characterizing protein–ligand interactions and developing machine learning-based scoring functions

X Zhang, C Shen, T Wang, Y Deng… - Briefings in …, 2023 - academic.oup.com
Cracking the entangling code of protein–ligand interaction (PLI) is of great importance to
structure-based drug design and discovery. Different physical and biochemical …

텍스트마이닝을이용한인공지능활용신약개발연구동향분석

남재우, 김영준 - 생명과학회지, 2023 - dbpia.co.kr
본 리뷰 논문은 2010 년부터 2022 년까지의 인공지능을 활용한 신약개발 관련 연구동향을
분석하여 정리하였다. 이러한 분석을 통해 2,421 개 연구의 초록을 코퍼스로 구성하고 …

Analysis of Research Trends in New Drug Development with Artificial Intelligence Using Text Mining

JW Nam, YJ Kim - Journal of Life Science, 2023 - koreascience.kr
This review analyzes research trends related to new drug development using artificial
intelligence from 2010 to 2022. This analysis organized the abstracts of 2,421 studies into a …