A gene graveyard in the genome of the fungus Podospora comata

P Silar, JM Dauget, V Gautier, P Grognet… - Molecular Genetics and …, 2019 - Springer
Mechanisms involved in fine adaptation of fungi to their environment include differential
gene regulation associated with single nucleotide polymorphisms and indels (including …

Gauging the trends of pseudogenes in plants

N Garewal, N Goyal, S Pathania, J Kaur… - Critical Reviews in …, 2021 - Taylor & Francis
Pseudogenes, the debilitated parts of ancient genes, were previously scrapped off as junk or
discarded genes with no functional significance. Pseudogenes have come under scrutiny for …

[HTML][HTML] Pseudogenization of the chloroplast threonine (trnT-GGU) gene in the sunflower family (Asteraceae)

Abdullah, F Mehmood, P Heidari, A Rahim, I Ahmed… - Scientific Reports, 2021 - nature.com
The chloroplast genome evolves through the course of evolution. Various types of
mutational events are found within the chloroplast genome, including insertions-deletions …

[HTML][HTML] A phylogenomic study of Iridaceae Juss. based on complete plastid genome sequences

K Kamra, J Jung, JH Kim - Frontiers in Plant Science, 2023 - frontiersin.org
The plastid genome has proven to be an effective tool for examining deep correlations in
plant phylogenetics, owing to its highly conserved structure, uniparental inheritance, and …

[HTML][HTML] Differences in Saprophytic Growth, Virulence, Genomes, and Secretomes of Ilyonectria robusta and I. mors-panacis Isolates from Roots of American Ginseng …

B Behdarvandi, T Hsiang, M Valliani, PH Goodwin - Horticulturae, 2023 - mdpi.com
A comparison of the virulence, saprophytic growth, and genomes of 12 isolates of Ilyonectria
mors-panacis and 4 isolates of I. robusta from Canada pathogenic to Panax quinquefolius …

Evolution of polyketide synthesis in a Dothideomycete forest pathogen

IK Ozturk, P Chettri, PY Dupont, I Barnes… - Fungal genetics and …, 2017 - Elsevier
Fungal secondary metabolites have many important biological roles and some, like the toxic
polyketide aflatoxin, have been intensively studied at the genetic level. Complete sets of …

Evolutionary relics dominate the small number of secondary metabolism genes in the hemibiotrophic fungus Dothistroma septosporum

IK Ozturk, PY Dupont, P Chettri, R McDougal, OJ Böhl… - Fungal biology, 2019 - Elsevier
Fungal secondary metabolites have important functions for the fungi that produce them, such
as roles in virulence and competition. The hemibiotrophic pine needle pathogen …

[HTML][HTML] Automated alignment-based curation of gene models in filamentous fungi

A Van der Burgt, E Severing, J Collemare… - BMC …, 2014 - Springer
Background Automated gene-calling is still an error-prone process, particularly for the highly
plastic genomes of fungal species. Improvement through quality control and manual curation …

Conservation, Comparative Genomics and Species Delimitation of the Reindeer Lichens (Cladonia)

JR Hoffman - 2022 - search.proquest.com
The genus Cladonia represents one of the most speciose genera of lichenized fungi, with
more than 500 known species encompassing a diverse array of morphologies and habits …

Role of proteolytic enzymes in the interaction of phytopathogenic microorganisms with plants

TA Valueva, BT Zaichik, NN Kudryavtseva - Biochemistry (Moscow), 2016 - Springer
Various forms of participation of proteolytic enzymes in pathogenesis and defense in plants
are reviewed. Along with extracellular proteinases, phytopathogenic microorganisms …