[HTML][HTML] Bayesian LASSO, scale space and decision making in association genetics

L Pasanen, L Holmström, MJ Sillanpää - PloS one, 2015 - journals.plos.org
Background LASSO is a penalized regression method that facilitates model fitting in
situations where there are as many, or even more explanatory variables than observations …

Next generation modeling in GWAS: comparing different genetic architectures

E López de Maturana, N Ibáñez-Escriche… - Human genetics, 2014 - Springer
The continuous advancement in genotyping technology has not been accompanied by the
application of innovative statistical methods, such as multi-marker methods (MMM), to …

[HTML][HTML] Identifying the driving factors of black bloom in Lake Bay through Bayesian LASSO

L Wang, Y Wang, H Cheng, J Cheng - International Journal of …, 2019 - mdpi.com
Black blooms are a serious and complex problem for lake bays, with far-reaching
implications for water quality and drinking safety. While Fe (II) and S (− II) have been …

Bayesian inference to partition determinants of community dynamics from observational time series

CM Mutshinda, ZV Finkel, CE Widdicombe, AJ Irwin - Community Ecology, 2019 - Springer
Ecological communities are shaped by a complex interplay between abiotic forcing, biotic
regulation and demographic stochasticity. However, community dynamics modelers tend to …

Large shifts in diatom and dinoflagellate biomass in the North Atlantic over six decades

C Mutshinda, ZV Finkel, AJ Irwin - bioRxiv, 2024 - biorxiv.org
The North Atlantic Ocean has large seasonal blooms rich in diatoms and dinoflagellates
which can contribute disproportionately relative to other primary producers to export …

[HTML][HTML] Impact of prior specifications in a shrinkage-inducing Bayesian model for quantitative trait mapping and genomic prediction

T Knürr, E Läärä, MJ Sillanpää - Genetics Selection Evolution, 2013 - Springer
Background In quantitative trait mapping and genomic prediction, Bayesian variable
selection methods have gained popularity in conjunction with the increase in marker data …

A fast algorithm for Bayesian multi-locus model in genome-wide association studies

W Duan, Y Zhao, Y Wei, S Yang, J Bai, S Shen… - Molecular Genetics and …, 2017 - Springer
Genome-wide association studies (GWAS) have identified a large amount of single-
nucleotide polymorphisms (SNPs) associated with complex traits. A recently developed …

[HTML][HTML] Analyzing medical data by using statistical learning models

MC Mariani, F Biney, OK Tweneboah - Mathematics, 2021 - mdpi.com
In this work, we investigated the prognosis of three medical data specifically, breast cancer,
heart disease, and prostate cancer by using 10 machine learning models. We applied all 10 …

Bayesian methods for gene expression analysis

A Lewin, L Bottolo, S Richardson - Handbook of Statistical …, 2019 - Wiley Online Library
We review the use of Bayesian methods for analysing gene expression data, from
microarrays and bulk RNA sequencing, focusing on methods which select groups of genes …

[PDF][PDF] Bayesian shrinkage estimation of time-varying covariance matrices in financial time series

MKP So, WK Liu, AMY Chu - Advances in Decision Sciences, 2018 - drive.google.com
Modeling financial returns is challenging because the correlations and variance of returns
are time-varying and the covariance matrices can be quite high-dimensional. In this paper …