[HTML][HTML] Principles and overview of sampling methods for modeling macromolecular structure and dynamics
T Maximova, R Moffatt, B Ma, R Nussinov… - PLoS computational …, 2016 - journals.plos.org
Investigation of macromolecular structure and dynamics is fundamental to understanding
how macromolecules carry out their functions in the cell. Significant advances have been …
how macromolecules carry out their functions in the cell. Significant advances have been …
Computational structure modeling for diverse categories of macromolecular interactions
Computational protein–protein docking is one of the most intensively studied topics in
structural bioinformatics. The field has made substantial progress through over three …
structural bioinformatics. The field has made substantial progress through over three …
[HTML][HTML] Molecular modeling applied to nucleic acid-based molecule development
A Krüger, FM Zimbres, T Kronenberger, C Wrenger - Biomolecules, 2018 - mdpi.com
Molecular modeling by means of docking and molecular dynamics (MD) has become an
integral part of early drug discovery projects, enabling the screening and enrichment of large …
integral part of early drug discovery projects, enabling the screening and enrichment of large …
Combining H/D exchange mass spectrometry and computational docking to derive the structure of protein–protein complexes
Protein–protein interactions are essential for biological function, but structures of protein–
protein complexes are difficult to obtain experimentally. To derive the protein complex of the …
protein complexes are difficult to obtain experimentally. To derive the protein complex of the …
[PDF][PDF] A human transcription factor in search mode
K Hauser, B Essuman, E Coutsias, M Garcia-Diaz… - Biophysical …, 2015 - cell.com
Transcription factors (TF) change shape to search and recognize DNA, shifting the energy
landscape from a weak binding mode to a tight binding mode. But the mechanism of TF …
landscape from a weak binding mode to a tight binding mode. But the mechanism of TF …
RNA–LIM: A novel procedure for analyzing protein/single-stranded RNA propensity data with concomitant estimation of interface structure
RNA–LIM is a procedure that can analyze various pseudo-potentials describing the affinity
between single-stranded RNA (ssRNA) ribonucleotides and surface amino acids to produce …
between single-stranded RNA (ssRNA) ribonucleotides and surface amino acids to produce …
Advances in human biology: combining genetics and molecular biophysics to pave the way for personalized diagnostics and medicine
E Alexov - Advances in Biology, 2014 - Wiley Online Library
Advances in several biology‐oriented initiatives such as genome sequencing and structural
genomics, along with the progress made through traditional biological and biochemical …
genomics, along with the progress made through traditional biological and biochemical …
A fragment-based docking simulation for investigating peptide–protein bindings
J Liao, YT Wang, CS Lin - Physical Chemistry Chemical Physics, 2017 - pubs.rsc.org
A fragment-based method was developed to investigate the binding conformations of
peptide ligands. This method efficiently avoids the high degree of freedom (DOF) of peptide …
peptide ligands. This method efficiently avoids the high degree of freedom (DOF) of peptide …
[PDF][PDF] Molecular interactions of nicotine and the nitrogenous bases of DNA and RNA calculated by improved quantum methods
M González-Pérez, M Briteño-Vázquez… - World Journal of …, 2016 - academia.edu
WORLD JOURNAL OF PHARMACEUTICAL RESEARCH Page 1 www.wjpr.net Vol 5, Issue 3,
2016. 1778 M. González-Pérez et al. World Journal of Pharmaceutical Research MOLECULAR …
2016. 1778 M. González-Pérez et al. World Journal of Pharmaceutical Research MOLECULAR …
[PDF][PDF] Interactions analysis of four chemotherapeutic drugs vs. nitrogenous bases of DNA and RNA, using quantum methods
M González-Perez - World Journal of Pharmaceutical Research, 2016 - researchgate.net
ABSTRACT Cyclophosphamide (CPA), Melphalan (MPH) Chlorambucil (CHB) and,
Ifosfamide (IPA) are commonly used in Chemotherapy. In this research, it studied the ECTs …
Ifosfamide (IPA) are commonly used in Chemotherapy. In this research, it studied the ECTs …