[PDF][PDF] Graph-based models of the Oenothera mitochondrial genome capture the enormous complexity of higher plant mitochondrial DNA organization

A Fischer, J Dotzek, D Walther… - NAR Genomics and …, 2022 - academic.oup.com
Plant mitochondrial genomes display an enormous structural complexity, as recombining
repeat-pairs lead to the generation of various sub-genomic molecules, rendering these …

Neargapless genome assemblies of Williams 82 and Lee cultivars for accelerating global soybean research

V Garg, AW Khan, K Fengler, V Llaca, Y Yuan… - The Plant …, 2023 - Wiley Online Library
Complete, gapless telomeretotelomere chromosome assemblies are a prerequisite for
comprehensively investigating the architecture of complex regions, like centromeres or …

Chromosome-level genome assembly and annotation of the yellow grouper, Epinephelus awoara

W Zhang, Y Yang, S Hua, Q Ruan, D Li, L Wang… - Scientific Data, 2024 - nature.com
Epinephelus awoara, as known as yellow grouper, is a significant economic marine fish that
has been bred artificially in China. However, the genetic structure and evolutionary history of …

Viruses in deep-sea cold seep sediments harbor diverse survival mechanisms and remain genetically conserved within species

Y Peng, Z Lu, D Pan, LD Shi, Z Zhao, Q Liu… - The ISME …, 2023 - academic.oup.com
Deep sea cold seep sediments have been discovered to harbor novel, abundant, and
diverse bacterial and archaeal viruses. However, little is known about viral genetic features …

NRAMP gene family in Kandelia obovata: genome-wide identification, expression analysis, and response to five different copper stress conditions

Q Hussain, T Ye, C Shang, S Li, A Khan… - Frontiers in Plant …, 2024 - frontiersin.org
Natural resistance-associated macrophage proteins (NRAMPs) are a class of metal
transporters found in plants that exhibit diverse functions across different species …

Knowing and naming: phage annotation and nomenclature for phage therapy

SR Grigson, SK Giles, RA Edwards… - Clinical Infectious …, 2023 - academic.oup.com
Bacteriophages, or phages, are viruses that infect bacteria shaping microbial communities
and ecosystems. They have gained attention as potential agents against antibiotic …

The telomere-to-telomere gap-free reference genome of wild blueberry (Vaccinium duclouxii) provides its high soluble sugar and anthocyanin accumulation

T Zeng, Z He, J He, W Lv, S Huang, J Li… - Horticulture …, 2023 - academic.oup.com
Vaccinium duclouxii, endemic to southwestern China, is a berry-producing shrub or small
tree belonging to the Ericaceae family, with high nutritive, medicinal, and ornamental value …

Prokaryotic and viral genomes recovered from 787 Japanese gut metagenomes revealed microbial features linked to diets, populations, and diseases

Y Tomofuji, T Kishikawa, Y Maeda, K Ogawa… - Cell Genomics, 2022 - cell.com
Summary We reconstructed 19,084 prokaryotic and 31,395 viral genomes from 787
Japanese gut metagenomes as Japanese metagenome-assembled genomes (JMAG) and …

The structural and functional divergence of a neglected three-finger toxin subfamily in lethal elapids

ZY Zhang, Y Lv, W Wu, C Yan, CY Tang, C Peng, JT Li - Cell Reports, 2022 - cell.com
Bungarus multicinctus is a widely distributed and medically important elapid snake that
produces lethal neurotoxic venom. To study and enhance existing antivenom, we explore …

Chromosome-scale assembly and analysis of biomass crop Miscanthus lutarioriparius genome

J Miao, Q Feng, Y Li, Q Zhao, C Zhou, H Lu… - Nature …, 2021 - nature.com
Miscanthus, a rhizomatous perennial plant, has great potential for bioenergy production for
its high biomass and stress tolerance. We report a chromosome-scale assembly of …