ppGpp: magic beyond RNA polymerase

ZD Dalebroux, MS Swanson - Nature Reviews Microbiology, 2012 - nature.com
During stress, bacteria undergo extensive physiological transformations, many of which are
coordinated by ppGpp. Although ppGpp is best known for enhancing cellular resilience by …

Diversity, versatility and complexity of bacterial gene regulation mechanisms: opportunities and drawbacks for applications in synthetic biology

I Bervoets, D Charlier - FEMS microbiology reviews, 2019 - academic.oup.com
Gene expression occurs in two essential steps: transcription and translation. In bacteria, the
two processes are tightly coupled in time and space, and highly regulated. Tight regulation …

The Role of Bacterial Enhancer Binding Proteins as Specialized Activators of σ54-Dependent Transcription

M Bush, R Dixon - Microbiology and Molecular Biology Reviews, 2012 - Am Soc Microbiol
Bacterial enhancer binding proteins (bEBPs) are transcriptional activators that assemble as
hexameric rings in their active forms and utilize ATP hydrolysis to remodel the conformation …

Regulation of alternative sigma factor use

S Österberg, T Peso-Santos… - Annual review of …, 2011 - annualreviews.org
Alternative bacterial sigma factors bind the catalytic core RNA polymerase to confer
promoter selectivity on the holoenzyme. The different holoenzymes are thus programmed to …

Antibacterial mechanism of plantaricin LPL-1, a novel class IIa bacteriocin against Listeria monocytogenes

Y Wang, Y Qin, Y Zhang, R Wu, P Li - Food control, 2019 - Elsevier
Plantaricin LPL-1, produced by Lactobacillus plantarum LPL-1, is a novel class IIa
bacteriocin with bactericidal activity against foodborne bacteria. The aim of this present …

Genome-wide protein–DNA interaction site mapping in bacteria using a double-stranded DNA-specific cytosine deaminase

LA Gallagher, E Velazquez, SB Peterson… - Nature …, 2022 - nature.com
DNA–protein interactions are central to fundamental cellular processes, yet widely
implemented technologies for measuring these interactions on a genome scale in bacteria …

Comparative analyses imply that the enigmatic Sigma factor 54 is a central controller of the bacterial exterior

C Francke, T Groot Kormelink, Y Hagemeijer… - BMC genomics, 2011 - Springer
Background Sigma-54 is a central regulator in many pathogenic bacteria and has been
linked to a multitude of cellular processes like nitrogen assimilation and important functional …

Development of colorimetric-based whole-cell biosensor for organophosphorus compounds by engineering transcription regulator DmpR

H Chong, CB Ching - ACS synthetic biology, 2016 - ACS Publications
It is useful for whole-cell biosensors to be based on colorimetric detection because the
output signal can be easily visualized. However, colorimetric-based whole-cell biosensors …

Function of nucleoid-associated proteins in chromosome structuring and transcriptional regulation

CJ Dorman - Journal of molecular microbiology and biotechnology, 2014 - karger.com
Nucleoid-associated proteins typically are abundant, low-molecular-mass polypeptides that
bind DNA and alter its shape and its ability to participate in transactions such as …

D-Ribose Interferes with Quorum Sensing to Inhibit Biofilm Formation of Lactobacillus paraplantarum L-ZS9

L Liu, R Wu, J Zhang, N Shang, P Li - Frontiers in Microbiology, 2017 - frontiersin.org
Biofilms help bacteria survive under adverse conditions, and the quorum sensing (QS)
system plays an important role in regulating their activities. Quorum sensing inhibitors (QSIs) …