New-generation sequencing technology in diagnosis of fungal plant pathogens: a dream comes true?

M Aragona, A Haegi, MT Valente, L Riccioni, L Orzali… - Journal of Fungi, 2022 - mdpi.com
The fast and continued progress of high-throughput sequencing (HTS) and the drastic
reduction of its costs have boosted new and unpredictable developments in the field of plant …

Advanced research tools for fungal diversity and its impact on forest ecosystem

M Adnan, W Islam, L Gang, HYH Chen - Environmental Science and …, 2022 - Springer
Fungi are dominant ecological participants in the forest ecosystems, which play a major role
in recycling organic matter and channeling nutrients across trophic levels. Fungal …

Metatranscriptomics sheds light on the links between the functional traits of fungal guilds and ecological processes in forest soil ecosystems

L Auer, M Buée, L Fauchery, V Lombard… - New …, 2024 - Wiley Online Library
Soil fungi belonging to different functional guilds, such as saprotrophs, pathogens, and
mycorrhizal symbionts, play key roles in forest ecosystems. To date, no study has compared …

New insight to the role of microbes in the methane exchange in trees: evidence from metagenomic sequencing

A Putkinen, HMP Siljanen, A Laihonen… - New …, 2021 - Wiley Online Library
Methane (CH4) exchange in tree stems and canopies and the processes involved are
among the least understood components of the global CH4 cycle. Recent studies have …

Metatranscriptomics captures dynamic shifts in mycorrhizal coordination in boreal forests

SR Law, AR Serrano, Y Daguerre… - Proceedings of the …, 2022 - National Acad Sciences
Carbon storage and cycling in boreal forests—the largest terrestrial carbon store—is
moderated by complex interactions between trees and soil microorganisms. However …

Stable functional structure despite high taxonomic variability across fungal communities in soils of old-growth montane forests

Q Zeng, A Lebreton, L Auer, X Man, L Jia, G Wang… - Microbiome, 2023 - Springer
Background Major advances over the past decade in molecular ecology are providing
access to soil fungal diversity in forest ecosystems worldwide, but the diverse functions and …

Linking processes to community functions—insights into litter decomposition combining fungal metatranscriptomics and environmental NMR profiling

MA Guerreiro, S Kambach, R Stoll, A Brachmann… - Mycological …, 2023 - Springer
In forest ecosystems, decomposition is essential for carbon and nutrient cycling and
therefore a key process for ecosystem functioning. During the decomposition process, litter …

Temperate tree microbiomes: divergent soil and phyllosphere microbial communities share few but dominant taxa

A Siegenthaler, AK Skidmore, GA de Groot, I Laros… - Plant and Soil, 2024 - Springer
Aims The phyllosphere and soil are crucial and distinct microbial spheres in forests,
connected through trees that interact with both. As part of the tree's holobiont, these …

Applying molecular and genetic methods to trees and their fungal communities

M Müller, U Kües, KB Budde, O Gailing - Applied Microbiology and …, 2023 - Springer
Forests provide invaluable economic, ecological, and social services. At the same time, they
are exposed to several threats, such as fragmentation, changing climatic conditions, or …

Foliar mycobiome remains unaltered under urban air-pollution but differentially express stress-related genes

VS Flores-Almaraz, C Truong, D Hernández-Oaxaca… - Microbial Ecology, 2024 - Springer
Air pollution caused by tropospheric ozone contributes to the decline of forest ecosystems;
for instance, sacred fir, Abies religiosa (Kunth) Schltdl. & Cham. forests in the peri-urban …