Adaptive immune receptor repertoire analysis

V Mhanna, H Bashour, K Lê Quý, P Barennes… - Nature Reviews …, 2024 - nature.com
B cell and T cell receptor repertoires compose the adaptive immune receptor repertoire
(AIRR) of an individual. The AIRR is a unique collection of antigen-specific receptors that …

[PDF][PDF] T-cell receptor repertoire sequencing in the era of cancer immunotherapy

ML Frank, K Lu, C Erdogan, Y Han, J Hu, T Wang… - Clinical Cancer …, 2023 - AACR
T cells are integral components of the adaptive immune system, and their responses are
mediated by unique T-cell receptors (TCR) that recognize specific antigens from a variety of …

The role of CD8+ T-cell clones in immune thrombocytopenia

A Malik, AA Sayed, P Han, MMH Tan… - Blood, The Journal …, 2023 - ashpublications.org
Immune thrombocytopenia (ITP) is traditionally considered an antibody-mediated disease.
However, a number of features suggest alternative mechanisms of platelet destruction. In …

[HTML][HTML] Haematopoietic stem cell transplantation results in extensive remodelling of the clonal T cell repertoire in multiple sclerosis

J Massey, K Jackson, M Singh, B Hughes… - Frontiers in …, 2022 - frontiersin.org
Autologous haematopoietic stem cell transplantation (AHSCT) is a vital therapeutic option
for patients with highly active multiple sclerosis (MS). Rates of remission suggest AHSCT is …

[HTML][HTML] Immunosenescence and autoimmunity: exploiting the T-cell receptor repertoire to investigate the impact of aging on multiple sclerosis

R Amoriello, A Mariottini, C Ballerini - Frontiers in Immunology, 2021 - frontiersin.org
T-cell receptor (TCR) repertoire diversity is a determining factor for the immune system
capability in fighting infections and preventing autoimmunity. During life, the TCR repertoire …

[HTML][HTML] Reference-based comparison of adaptive immune receptor repertoires

CR Weber, T Rubio, L Wang, W Zhang, PA Robert… - Cell Reports …, 2022 - cell.com
B and T cell receptor (immune) repertoires can represent an individual's immune history.
While current repertoire analysis methods aim to discriminate between health and disease …

[HTML][HTML] Human thymic putative CD8αα precursors exhibit a biased TCR repertoire in single cell AIRR-seq

M Heimli, S Tennebø Flåm, H Sagsveen Hjorthaug… - Scientific Reports, 2023 - nature.com
Thymic T cell development comprises T cell receptor (TCR) recombination and assessment
of TCR avidity towards self-peptide-MHC complexes presented by antigen-presenting cells …

[HTML][HTML] Signatures of T cell immunity revealed using sequence similarity with TCRDivER algorithm

M Vujović, P Marcatili, B Chain, J Kaplinsky… - Communications …, 2023 - nature.com
Abstract Changes in the T cell receptor (TCR) repertoires have become important markers
for monitoring disease or therapy progression. With the rise of immunotherapy usage in …

[HTML][HTML] Relevance of pathogenetic mechanisms to clinical effectiveness of B-cell-depleting monoclonal antibodies in multiple sclerosis

L Massacesi, A Mariottini, F Nicoletti - Journal of Clinical Medicine, 2022 - mdpi.com
Evidence of the effectiveness of B-cell-depleting monoclonal antibodies (mAbs) in multiple
sclerosis (MS) prompted a partial revisitation of the pathogenetic paradigm of the disease …

[HTML][HTML] A Nextflow pipeline for T-cell receptor repertoire reconstruction and analysis from RNA sequencing data

T Rubio, M Chernigovskaya, S Marquez, C Marti… - ImmunoInformatics, 2022 - Elsevier
T-cell receptor (TCR) analysis is relevant for the study of immune system diseases. The
expression of TCRs is usually measured with targeted sequencing approaches where TCR …