Sequencing and characterizing short tandem repeats in the human genome

HA Tanudisastro, IW Deveson, H Dashnow… - Nature Reviews …, 2024 - nature.com
Short tandem repeats (STRs) are highly polymorphic sequences throughout the human
genome that are composed of repeated copies of a 1–6-bp motif. Over 1 million variable …

Beyond the exome: what's next in diagnostic testing for Mendelian conditions

MH Wojcik, CM Reuter, S Marwaha… - The American Journal of …, 2023 - cell.com
Despite advances in clinical genetic testing, including the introduction of exome sequencing
(ES), more than 50% of individuals with a suspected Mendelian condition lack a precise …

Normal and pathogenic variation of RFC1 repeat expansions: implications for clinical diagnosis

N Dominik, S Magri, R Currò, E Abati, S Facchini… - Brain, 2023 - academic.oup.com
Cerebellar ataxia, neuropathy and vestibular areflexia syndrome (CANVAS) is an autosomal
recessive neurodegenerative disease, usually caused by biallelic AAGGG repeat …

[HTML][HTML] The application of long-read sequencing in clinical settings

JB Oehler, H Wright, Z Stark, AJ Mallett, U Schmitz - Human genomics, 2023 - Springer
Long-read DNA sequencing technologies have been rapidly evolving in recent years, and
their ability to assess large and complex regions of the genome makes them ideal for clinical …

Data Storage Using DNA

S Wang, X Mao, F Wang, X Zuo, C Fan - Advanced Materials, 2024 - Wiley Online Library
The exponential growth of global data has outpaced the storage capacities of current
technologies, necessitating innovative storage strategies. DNA, as a natural medium for …

[HTML][HTML] Rapid and comprehensive diagnostic method for repeat expansion diseases using nanopore sequencing

S Miyatake, E Koshimizu, A Fujita, H Doi… - NPJ Genomic …, 2022 - nature.com
We developed a diagnostic method for repeat expansion diseases using a long-read
sequencer to improve currently available, low throughput diagnostic methods. We employed …

[HTML][HTML] The landscape of genomic structural variation in Indigenous Australians

ALM Reis, M Rapadas, JM Hammond… - Nature, 2023 - nature.com
Indigenous Australians harbour rich and unique genomic diversity. However, Aboriginal and
Torres Strait Islander ancestries are historically under-represented in genomics research …

Efficient real-time selective genome sequencing on resource-constrained devices

PJ Shih, H Saadat, S Parameswaran… - …, 2023 - academic.oup.com
Background Third-generation nanopore sequencers offer selective sequencing or “Read
Until” that allows genomic reads to be analyzed in real time and abandoned halfway if not …

Analysis and benchmarking of small and large genomic variants across tandem repeats

AC English, E Dolzhenko, H Ziaei Jam… - Nature …, 2024 - nature.com
Tandem repeats (TRs) are highly polymorphic in the human genome, have thousands of
associated molecular traits and are linked to over 60 disease phenotypes. However, they …

Long‐read sequencing for molecular diagnostics in constitutional genetic disorders

LK Conlin, E Aref‐Eshghi, DA McEldrew… - Human …, 2022 - Wiley Online Library
Long‐read sequencing (LRS) has been around for more than a decade, but widespread
adoption of the technology has been slow due to the perceived high error rates and high …