[HTML][HTML] A navigation guide of synthetic biology tools for Pseudomonas putida
Pseudomonas putida is a microbial chassis of huge potential for industrial and
environmental biotechnology, owing to its remarkable metabolic versatility and ability to …
environmental biotechnology, owing to its remarkable metabolic versatility and ability to …
Mechanisms of solvent resistance mediated by interplay of cellular factors in Pseudomonas putida
JL Ramos, M Sol Cuenca… - FEMS microbiology …, 2015 - academic.oup.com
A number of microorganisms have the ability to thrive in the presence of a range of toxic
solvents. Tolerance to these chemicals is a multifactorial process, meaning that bacterial …
solvents. Tolerance to these chemicals is a multifactorial process, meaning that bacterial …
From lignin to nylon: cascaded chemical and biochemical conversion using metabolically engineered Pseudomonas putida
M Kohlstedt, S Starck, N Barton, J Stolzenberger… - Metabolic …, 2018 - Elsevier
Cis, cis-muconic acid (MA) is a chemical that is recognized for its industrial value and is
synthetically accessible from aromatic compounds. This feature provides the attractive …
synthetically accessible from aromatic compounds. This feature provides the attractive …
Exploring the synthetic biology potential of bacteriophages for engineering non-model bacteria
Non-model bacteria like Pseudomonas putida, Lactococcus lactis and other species have
unique and versatile metabolisms, offering unique opportunities for Synthetic Biology …
unique and versatile metabolisms, offering unique opportunities for Synthetic Biology …
SBML qualitative models: a model representation format and infrastructure to foster interactions between qualitative modelling formalisms and tools
Background Qualitative frameworks, especially those based on the logical discrete
formalism, are increasingly used to model regulatory and signalling networks. A major …
formalism, are increasingly used to model regulatory and signalling networks. A major …
The private life of environmental bacteria: pollutant biodegradation at the single cell level
PI Nikel, R Silva‐Rocha, I Benedetti… - Environmental …, 2014 - Wiley Online Library
Bacteria display considerable cell‐to‐cell heterogeneity in a number of genetic and
physiological traits. Stochastic differences in regulatory patterns (eg at the transcriptional …
physiological traits. Stochastic differences in regulatory patterns (eg at the transcriptional …
Antifragility predicts the robustness and evolvability of biological networks through multi-class classification with a convolutional neural network
Robustness and evolvability are essential properties to the evolution of biological networks.
To determine if a biological network is robust and/or evolvable, it is required to compare its …
To determine if a biological network is robust and/or evolvable, it is required to compare its …
Engineering multicellular logic in bacteria with metabolic wires
R Silva-Rocha, V de Lorenzo - ACS synthetic biology, 2014 - ACS Publications
Aromatic biodegradation pathways of environmental bacteria are vast sources of matching
trios of enzymes, substrates and regulators that can be refactored to run logic operations …
trios of enzymes, substrates and regulators that can be refactored to run logic operations …
Plasmid‐Mediated Tolerance Toward Environmental Pollutants
Summary Since the Industrial Revolution, there has been an increasing pace in the
production of environmentally hazardous compounds that deliberately or accidentally have …
production of environmentally hazardous compounds that deliberately or accidentally have …
Lac Operon Boolean Models: Dynamical Robustness and Alternative Improvements
In Veliz-Cuba and Stigler 2011, Boolean models were proposed for the lac operon in
Escherichia coli capable of reproducing the operon being OFF, ON and bistable for three …
Escherichia coli capable of reproducing the operon being OFF, ON and bistable for three …