[HTML][HTML] Generalisable long COVID subtypes: findings from the NIH N3C and RECOVER programmes

JT Reese, H Blau, E Casiraghi, T Bergquist… - …, 2023 - thelancet.com
Background Stratification of patients with post-acute sequelae of SARS-CoV-2 infection
(PASC, or long COVID) would allow precision clinical management strategies. However …

[HTML][HTML] The need for multimodal health data modeling: A practical approach for a federated-learning healthcare platform

F Cremonesi, V Planat, V Kalokyri, H Kondylakis… - Journal of Biomedical …, 2023 - Elsevier
Federated learning initiatives in healthcare are being developed to collaboratively train
predictive models without the need to centralize sensitive personal data. GenoMed4All is …

Computational analysis of neurodevelopmental phenotypes: Harmonization empowers clinical discovery

D Lewis‐Smith, S Parthasarathy, J Xian… - Human …, 2022 - Wiley Online Library
Making a specific diagnosis in neurodevelopmental disorders is traditionally based on
recognizing clinical features of a distinct syndrome, which guides testing of its possible …

Mondo: Unifying diseases for the world, by the world

NA Vasilevsky, NA Matentzoglu, S Toro, JE Flack IV… - medRxiv, 2022 - medrxiv.org
There are thousands of distinct disease entities and concepts, each of which are known by
different and sometimes contradictory names. The Monarch Initiative aims to integrate …

Beacon v2 and Beacon networks: a “lingua franca” for federated data discovery in biomedical genomics, and beyond

J Rambla, M Baudis, R Ariosa, T Beck… - Human …, 2022 - Wiley Online Library
Beacon is a basic data discovery protocol issued by the Global Alliance for Genomics and
Health (GA4GH). The main goal addressed by version 1 of the Beacon protocol was to test …

Prenatal phenotyping: a community effort to enhance the Human Phenotype Ontology

F Dhombres, P Morgan, BP Chaudhari… - American Journal of …, 2022 - Wiley Online Library
Technological advances in both genome sequencing and prenatal imaging are increasing
our ability to accurately recognize and diagnose Mendelian conditions prenatally …

Deep phenotyping: symptom annotation made simple with SAMS

R Steinhaus, S Proft, E Seelow, T Schalau… - Nucleic acids …, 2022 - academic.oup.com
Precision medicine needs precise phenotypes. The Human Phenotype Ontology (HPO)
uses clinical signs instead of diagnoses and has become the standard annotation for …

[HTML][HTML] Implementation of privacy and security for a genomic information system based on standards

S Llorente, J Delgado - Journal of personalized medicine, 2022 - mdpi.com
Genomic information is a very sensitive type of digital information as it not only applies to a
person, but also to close relatives. Therefore, privacy provision is key to protecting genomic …

[HTML][HTML] Klarigi: Characteristic explanations for semantic biomedical data

K Slater, JA Williams, PN Schofield, S Russell… - Computers in Biology …, 2023 - Elsevier
Annotation of biomedical entities with ontology classes provides for formal semantic analysis
and mobilisation of background knowledge in determining their relationships. To date …

CardioHotspots: a database of mutational hotspots for cardiac disorders

A García S, M Costa, A García-Zarzoso, O Pastor - Database, 2024 - academic.oup.com
Mutational hotspots are DNA regions with an abnormally high frequency of genetic variants.
Identifying whether a variant is located in a mutational hotspot is critical for determining the …