Mechanisms of connectome development

M Kaiser - Trends in Cognitive Sciences, 2017 - cell.com
At the centenary of D'Arcy Thompson's seminal work 'On Growth and Form', pioneering the
description of principles of morphological changes during development and evolution …

[HTML][HTML] The growth of cognition: Free energy minimization and the embryogenesis of cortical computation

JJ Wright, PD Bourke - Physics of Life Reviews, 2021 - Elsevier
The assumption that during cortical embryogenesis neurons and synaptic connections are
selected to form an ensemble maximising synchronous oscillation explains mesoscopic …

Adaptive rewiring in weighted networks shows specificity, robustness, and flexibility

I Rentzeperis, C Van Leeuwen - Frontiers in Systems Neuroscience, 2021 - frontiersin.org
Brain network connections rewire adaptively in response to neural activity. Adaptive rewiring
may be understood as a process which, at its every step, is aimed at optimizing the efficiency …

Constructive connectomics: How neuronal axons get from here to there using gene-expression maps derived from their family trees

S Kerstjens, G Michel, RJ Douglas - PLoS computational biology, 2022 - journals.plos.org
During brain development, billions of axons must navigate over multiple spatial scales to
reach specific neuronal targets, and so build the processing circuits that generate the …

[HTML][HTML] An optimization approach for agent-based computational models of biological development

P Gonzalez-de-Aledo, A Vladimirov, M Manca… - … in Engineering Software, 2018 - Elsevier
Current research in the field of computational biology often involves simulations on high-
performance computer clusters. It is crucial that the code of such simulations is efficient and …

A generative growth model for thalamocortical axonal branching in primary visual cortex

P Kassraian-Fard, M Pfeiffer… - PLoS computational …, 2020 - journals.plos.org
Axonal morphology displays large variability and complexity, yet the canonical regularities of
the cortex suggest that such wiring is based on the repeated initiation of a small set of …

Nonlinear growth: an origin of hub organization in complex networks

R Bauer, M Kaiser - Royal Society open science, 2017 - royalsocietypublishing.org
Many real-world networks contain highly connected nodes called hubs. Hubs are often
crucial for network function and spreading dynamics. However, classical models of how …

Retinal self-organization: a model of retinal ganglion cells and starburst amacrine cells mosaic formation

J de Montigny, E Sernagor, R Bauer - Open biology, 2023 - royalsocietypublishing.org
Individual retinal cell types exhibit semi-regular spatial patterns called retinal mosaics.
Retinal ganglion cells (RGCs) and starburst amacrine cells (SACs) are known to exhibit …

The biodynamo project: Creating a platform for large-scale reproducible biological simulations

L Breitwieser, R Bauer, A Di Meglio, L Johard… - arXiv preprint arXiv …, 2016 - arxiv.org
Computer simulations have become a very powerful tool for scientific research. In order to
facilitate research in computational biology, the BioDynaMo project aims at a general …

The search of “canonical” explanations for the cerebral cortex

A Plebe - History and Philosophy of the Life Sciences, 2018 - Springer
This paper addresses a fundamental line of research in neuroscience: the identification of a
putative neural processing core of the cerebral cortex, often claimed to be “canonical”. This …