Status and prospects of association mapping in plants

C Zhu, M Gore, ES Buckler, J Yu - The plant genome, 2008 - Wiley Online Library
There is tremendous interest in using association mapping to identify genes responsible for
quantitative variation of complex traits with agricultural and evolutionary importance. Recent …

Applications of single nucleotide polymorphisms in crop genetics

A Rafalski - Current opinion in plant biology, 2002 - Elsevier
The discovery of single nucleotide polymorphisms (SNPs) and insertions/deletions, which
are the basis of most differences between alleles, has been simplified by recent …

Microsatellites for ecologists: a practical guide to using and evaluating microsatellite markers

KA Selkoe, RJ Toonen - Ecology letters, 2006 - Wiley Online Library
Recent improvements in genetic analysis and genotyping methods have resulted in a rapid
expansion of the power of molecular markers to address ecological questions …

Homoplasy and mutation model at microsatellite loci and their consequences for population genetics analysis

A Estoup, P Jarne, JM Cornuet - Molecular ecology, 2002 - Wiley Online Library
Homoplasy has recently attracted the attention of population geneticists, as a consequence
of the popularity of highly variable stepwise mutating markers such as microsatellites …

Standard methods for characterising subspecies and ecotypes of Apis mellifera

MD Meixner, MA Pinto, M Bouga, P Kryger… - Journal of Apicultural …, 2013 - Taylor & Francis
The natural diversity of honey bees in Europe is eroding fast. A multitude of reasons lead to
a loss of both genetic diversity and specific adaptations to local conditions. To preserve …

The report of my death was an exaggeration: a review for researchers using microsatellites in the 21st century

RGJ Hodel, MC Segovia‐Salcedo… - Applications in plant …, 2016 - Wiley Online Library
Microsatellites, or simple sequence repeats (SSRs), have long played a major role in
genetic studies due to their typically high polymorphism. They have diverse applications …

[HTML][HTML] SNP frequency, haplotype structure and linkage disequilibrium in elite maize inbred lines

ADA Ching, KS Caldwell, M Jung, M Dolan… - BMC genetics, 2002 - Springer
Background Recent studies of ancestral maize populations indicate that linkage
disequilibrium tends to dissipate rapidly, sometimes within 100 bp. We set out to examine …

Association mapping of yield and its components in rice cultivars

HA Agrama, GC Eizenga, W Yan - Molecular breeding, 2007 - Springer
To make advances in rice breeding it is important to understand the relatedness and
ancestry of introduced rice accessions, and identify SSR markers associated with …

Mutational dynamics of microsatellites

A Bhargava, FF Fuentes - Molecular biotechnology, 2010 - Springer
Microsatellites are a ubiquitous class of simple repetitive DNA sequences, which are
widespread in both eukaryotic and prokaryotic genomes. The use of microsatellites as …

Hybrid origins of honeybees from Italy (Apis mellifera ligustica) and Sicily (A. m. sicula)

P Franck, L Garnery, G Celebrano… - Molecular …, 2000 - Wiley Online Library
The genetic variability of honeybee populations Apis mellifera ligustica, in continental Italy,
and of A. m. sicula, in Sicily, was investigated using nuclear (microsatellite) and …