Is next-generation sequencing the way to go for residual disease monitoring in acute lymphoblastic leukemia?

M Kotrova, J Trka, M Kneba, M Brüggemann - Molecular diagnosis & …, 2017 - Springer
Minimal residual disease (MRD) is the most important independent prognostic factor in
acute lymphoblastic leukemia (ALL). Since it has been implemented into in treatment …

Quantitative T cell repertoire analysis by deep cDNA sequencing of T cell receptor α and β chains using next-generation sequencing (NGS)

H Fang, R Yamaguchi, X Liu, Y Daigo, PY Yew… - …, 2014 - Taylor & Francis
Immune responses play a critical role in various disease conditions including cancer and
autoimmune diseases. However, to date, there has not been a rapid, sensitive …

Fast multiclonal clusterization of V (D) J recombinations from high-throughput sequencing

M Giraud, M Salson, M Duez, C Villenet, S Quief… - BMC genomics, 2014 - Springer
Abstract Background V (D) J recombinations in lymphocytes are essential for immunological
diversity. They are also useful markers of pathologies. In leukemia, they are used to quantify …

Convergent antibody evolution and clonotype expansion following influenza virus vaccination

D Forgacs, RB Abreu, GA Sautto, GA Kirchenbaum… - PLoS …, 2021 - journals.plos.org
Recent advances in high-throughput single cell sequencing have opened up new avenues
into the investigation of B cell receptor (BCR) repertoires. In this study, PBMCs were …

The pipeline repertoire for Ig-Seq analysis

L López-Santibáñez-Jácome… - Frontiers in …, 2019 - frontiersin.org
With the advent of high-throughput sequencing of immunoglobulin genes (Ig-Seq), the
understanding of antibody repertoires and their dynamics among individuals and …

Immunoglobulin variable domain high-throughput sequencing reveals specific novel mutational patterns in POEMS syndrome

S Bender, V Javaugue, A Saintamand… - Blood, The Journal …, 2020 - ashpublications.org
Polyneuropathy, organomegaly, endocrinopathy, monoclonal gammopathy, and skin
changes (POEMS) syndrome is a rare multisystem disease resulting from an underlying …

[HTML][HTML] The methods and advances of adaptive immune receptors repertoire sequencing

H Liu, W Pan, C Tang, Y Tang, H Wu, A Yoshimura… - Theranostics, 2021 - ncbi.nlm.nih.gov
The adaptive immune response is a powerful tool, capable of recognizing, binding to, and
neutralizing a vast number of internal and external threats via T or B lymphatic receptors with …

IgIDivA: immunoglobulin intraclonal diversification analysis

L Zaragoza-Infante, V Junet… - Briefings in …, 2022 - academic.oup.com
Intraclonal diversification (ID) within the immunoglobulin (IG) genes expressed by B cell
clones arises due to ongoing somatic hypermutation (SHM) in a context of continuous …

Lower IgG somatic hypermutation rates during acute dengue virus infection is compatible with a germinal center-independent B cell response

EE Godoy-Lozano, J Téllez-Sosa… - Genome medicine, 2016 - Springer
Background The study of human B cell response to dengue virus (DENV) infection is critical
to understand serotype-specific protection and the cross-reactive sub-neutralizing response …

Systematic comparative evaluation of methods for investigating the TCRβ repertoire

X Liu, W Zhang, X Zeng, R Zhang, Y Du, X Hong… - PloS one, 2016 - journals.plos.org
High-throughput sequencing has recently been applied to profile the high diversity of
antibodyome/B cell receptors (BCRs) and T cell receptors (TCRs) among immune cells. To …